Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC103035335 |
| gene name | atp2a2,atp2a2a,LOC107757297,LOC108265716 |
| gene type | coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035902.1 |
| NCBI id | CM008305.1 |
| chromosome length | 52532229 |
| location | 36296278 ~ 36331569 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| symbol | description |
|---|---|
| atp2a2a | Predicted to enable P-type calcium transporter activity. Acts upstream of or within heart looping and regulation of heart contraction. Predicted to be located in membrane and sarcoplasmic reticulum. Predicted to be active in sarcoplasmic reticulum membrane. Predicted to be integral component of membrane. Is expressed in cardiovascular system; musculature system; pectoral fin; polster; and somite. Human ortholog(s) of this gene implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension. Orthologous to human ATP2A2 (ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2). |
| atp2a2 | Enables several functions, including P-type calcium transporter activity involved in regulation of cardiac muscle cell membrane potential; S100 protein binding activity; and protein C-terminus binding activity. Involved in several processes, including calcium ion transport from cytosol to endoplasmic reticulum; macroautophagy; and mitochondrion-endoplasmic reticulum membrane tethering. Located in endoplasmic reticulum membrane and longitudinal sarcoplasmic reticulum. Part of calcium ion-transporting ATPase complex. Colocalizes with intercalated disc. Implicated in acrokeratosis verruciformis; essential hypertension; keratosis follicularis; and pulmonary hypertension. |
| description |
|---|
| PREDICTED: sarcoplasmic/endoplasmic reticulum calcium ATPase 2 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0008016 | regulation of heart contraction | biological_process |
| GO:0006816 | calcium ion transport | biological_process |
| GO:0001947 | heart looping | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005388 | calcium transmembrane transporter activity, phosphorylative mechanism | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| id | description |
|---|---|
| K05853 | ATP2A; P-type Ca2+ transporter type 2A |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_022670581.1 | True | 4410 | mRNA | 0.52 | 20 | 36296278 | 36329181 |
| XM_022670582.1 | False | 4114 | mRNA | 0.53 | 21 | 36296278 | 36331569 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ift81 | ift81,LOC106585468 | coding | upstream | 6477 | 36262411 ~ 36289801 (+) |
| LOC103035951 | LOC108438364,LOC107598973,LOC107757293 | coding | upstream | 91175 | 36099455 ~ 36205103 (+) |
| fxn | fxn | coding | upstream | 214825 | 36072072 ~ 36081453 (+) |
| dimt1 | dimt1,LOC107699721 | coding | upstream | 325347 | 35965198 ~ 35970931 (+) |
| cenph | cenph | coding | upstream | 340426 | 35948598 ~ 35955852 (+) |
| ntng2 | ntng2,ntng2a,LOC108438355,LOC106585788 | coding | downstream | 161933 | 36493502 ~ 36585412 (+) |
| endog | endog,LOC107736532 | coding | downstream | 264447 | 36596016 ~ 36598896 (+) |
| LOC103040549 | NA | coding | downstream | 732830 | 37064399 ~ 37085499 (+) |
| LOC111192679 | NA | coding | downstream | 754873 | 37086442 ~ 37091387 (+) |
| LOC103044321 | plekha2,LOC108414546 | coding | downstream | 763145 | 37094714 ~ 37110794 (+) |
| G56756 | NA | non-coding | upstream | 52553 | 36171914 ~ 36243725 (+) |
| G56767 | fnbp1,LOC108264955 | non-coding | upstream | 68625 | 36227237 ~ 36227653 (+) |
| G56764 | NA | non-coding | upstream | 75074 | 36219895 ~ 36221204 (+) |
| G56749 | NA | non-coding | upstream | 85013 | 36201442 ~ 36211265 (+) |
| G56753 | NA | non-coding | upstream | 144788 | 36129056 ~ 36151490 (+) |
| G56786 | rapgef1,LOC108265900 | non-coding | downstream | 16057 | 36347626 ~ 36353279 (+) |
| G56811 | NA | non-coding | downstream | 80361 | 36411930 ~ 36412215 (+) |
| G56812 | NA | non-coding | downstream | 80856 | 36412425 ~ 36412757 (+) |
| G56836 | NA | non-coding | downstream | 229196 | 36560765 ~ 36579538 (+) |
| G56837 | NA | non-coding | downstream | 229811 | 36561380 ~ 36634827 (+) |
| G56701 | pola2,LOC107710902,LOC107657899 | other | upstream | 331768 | 35956104 ~ 35964510 (+) |
| G56504 | NA | other | upstream | 837401 | 35420718 ~ 35458877 (+) |
| LOC103032256 | dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 | other | upstream | 1012007 | 35276079 ~ 35284271 (+) |
| ikbkb | ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 | other | upstream | 1023750 | 35226485 ~ 35272528 (+) |
| LOC103047498 | NA | other | upstream | 1306993 | 34961800 ~ 34989285 (+) |
| G57066 | NA | other | downstream | 673704 | 37005273 ~ 37005798 (+) |
| agtpbp1 | agtpbp1 | other | downstream | 2777675 | 39109244 ~ 39153476 (+) |
| frmd3 | frmd3,LOC107678471 | other | downstream | 2960502 | 39292071 ~ 39370585 (+) |
| LOC103039219 | iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 | other | downstream | 3635521 | 39967090 ~ 40090271 (+) |
| G57664 | NA | other | downstream | 3713084 | 40044653 ~ 40046467 (+) |
