ntng2 (ntng2,ntng2a,LOC108438355,LOC106585788)


Basic Information

Item Value
gene id ntng2
gene name ntng2,ntng2a,LOC108438355,LOC106585788
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36493502 ~ 36585412 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670588.1
ATCCCCTCCCTGGTTCTTCCCTCCAGCCTCCTCCAGTCATGTGACCGCGGTCCTGCCCCTTTAAGCAGGGCGGGCTGCCTGATCTCCTCCCGGGACGCTTCCCTGCTCCTCCGCGCAGCGCCACAAACTTTCTCACTGAGCCCAGGAACAGAGCTACGGAGCGGGACAGCCGGCCTCCAGCACCCgggctgattattattattcttaaacACGCTTTAAATAACATCATCCTTTAAAAACAGGAGCTGCAGAAGCTCCAGAAGCCccgcagcagagagagagagagagggatagagggataGAGAGGGGGAAAGTTGATGGtgcagaaggaggaggaggagaggagagagacccGGAGCTCGAGAGCGGGAGCGGGAGCTGGAGCGGAGCTGCGCGGGGAGAGGGAGCCGGAGACCCGGCAGAGATAAGATCCAGAGCCCGGAGGAGCagcgggaggaggaggagcgggagaggaaaaagaaaggagagatgCTGCTGATTGAAGAAGCATCCagaagaaagagataaaggaaAGAAAGGAGGAACGGAACGGGTTTGAGTGGAACTTCACaagaaaacaagataaaaaagaggaaaagtgCGAAGATTAAAGACTACAAATCAGCGGAGCCATGCGCGCGGACCCAGCCtgaagtgctgctgctgcttagcCGGGAGGAGACGCGATGCTCCGGGGGAGGCTGGGGCGGAGCAGAGGCGTGGGCTTGGTGGCAAGACGATGAGCCTCACTCGGGagagaaagacagggatgagagctgctgatgctgatgatcTACAGAGCTGTCGCACGTCTACAAGCACATCGACACATCCAACAGCATGAGGAAGACCTGTGGACTTTACTGCTTAACGTGCACGAGAGAAGATGTTCACCTGAGCTGTGTGAGGTCAACCAAGTCATAAAATCAGAATACTTTTATCACACACTCTTTTGGTGTTTAAATTGGTTTTTACCACCAATAAGAAGAACGTGAAAAACACTCTTCACACAAGCGAATGACTATAAGTGAATGACTATAAGCGAATGATTCCAAGCGAATGGATGGTTGATGGTCCAGATCCCGAGCGATGAAAGGTGTCCACCGTCCATGCTGAAGCCTCCCGCCcgcccgctctctctctctctccagctgtgGCACCAGTCGCCTCCCCATGCCCGCGGTGGTACCCAGTGCCATGCTCTTACAGGCGTCCCTCTTCCTCCACTGCGTCCTCCTGACTCTCGGCCAGTACGACATATGCAAGTCGCTGGTCAGCACTGACGATGGACCCACGTGGGAGTATTACGCCTGCCAGCCCAGATCCATGTCCATGAAGGACTACATGCAGGTCCGAGTGGACCCCCCCAACATCACCTGCGGGAACCCACCTGAGAGGTTCTGCACGCTGGAAAACCCGTACCTGTGCAGCGATGAATGCGACGCCTCCACCCCGGACCTCGCCCATCCGCCGCAGCTCATGCAGGACCGCGAGCGCAACGGCCTCATCACCTACTGGCAGACGGTAACGTGGAGCCGCTACCCGGAGCCGCTGCTGGCGAATATCACGCTGTCCTGGAACAAGAGCCTGGAGGTGACCGACGACATCGAGATCACCTTCGAGTACGGCCGGCCCACCATCATGGTGCTGGAGAAGTCGCGGGATAAGGGCAGAACCTGGCAACCCTATCAGTACTACGCCGACGACTGCTTCGAAGTGTTCGGGATGCATCCCAAGAAGGTGCAGGACCTCTCGGCCGCCAACGTGACGCGGGTCATCTGCACCGAGGAGTACTCGCGCTGGGTCGGCTCCAAGAACGAGAAGGCGGTGCGCTTCGAGGTCCGGTACCGATTCGCCATCTTCGCCGGCCCCAAGCTGCTGAACATGGACAACCTGTACACCAGGATGGAGAGCATGAAGGGCCTGCGGGACTTCTTCACCTTCACCGACCTGAGGCTGCGGCTGATCCGGCCGGCGCTCGGAGGAACCTACGTCCAGAGAGACAACCTGCTCAAGTACTTTTACGCCATCTCCAACATCGAGGTGCAGGCCAGGTGTAAGTGTAATCTTCATGCCGGACAGTGTACGTTCCGTGAGGGAAGTCTTCAGTGTGACTGTGAACACAACACCACCGGGCAGGACTGCGCTCGCTGTGAGAAAGGCTTCAAGGCCAAGTCCTGGAAACCTGGCTCTTACCTGCCCACCCCCAACGGCTCCCCCAACACCTgtgaaGCGGCGGGTACTCTTGGCAACTGTGAGTGTTACGGTCACTCGAACCGCTGCAGTTATATTGACTTTATCAACATTGTGACTTGCGTGAGCTGCAAGCACAACACTAGAGGGCAGAACTGCCAGCACTGCCGGCTCGGATACTTTCGCAACGCTTCTGCTGAGCTGGACGATGAGAATGTTTGCATAGAGTGTAACTGTAATCAGCTGGGCTCTCTGAACGCTCGCTGTAATGAGACGGGGTTCTGTCAGTGTCGGGACGGGACCACGGGTCAGAAGTGTGAGGACTGCCTGCCTGGATACAACTGGAAACAAGGCTGCGTCCAGAACATGTGCGATGACGAGCTGCTGCTGTGCCAGAACGGCGGGACGTGTTTCCAGAACCAGAAGTGCATATGTCCGTCCGATTTTAAAGGCGTGTTGTGCGAGCAGCCGCGCTGCGAGGGGGAGAAAGGCTGCAGCGGCGCCCCGGCCTCAGCCTGCTACCTCAGCCTCATCACCACGGTGCTGTGCCTCCTCACCAGCAGCCTGCTCACCGCCAGCGCGTAGAGCCAGCCTCAGCCCACACGCAGCACCCCCCCCGGCCACGCGGGGAGAGCGGAACAGCGGCCGCGGCTGTTACTGCACGGAGCGGACCTCGCCGCCCGGGGACGGCCACCGCGGCCACCGCCTGACCTTCCCACCAGAAGCTGCTTGCTTTTTTATGTCTGCTTTTAGAACTGACTGAACTGAACCTctggacagagagacagacagagagagagacagacagacagagagacagacatacatacagagagacttataaacaaacaaaaaaaagctacaaACTACAACCTACGATTCTCTGTGAAcacaaaagcaaagaaaaaa
>XM_022670589.1
CCATCATCCCCTCCCTGGTTCTTCCCTCCAGCCTCCTCCAGTCATGTGACCGCGGTCCTGCCCCTTTAAGCAGGGCGGGCTGCCTGATCTCCTCCCGGGACGCTTCCCTGCTCCTCCGCGCAGCGCCACAAACTTTCTCACTGAGCCCAGGAACAGAGCTACGGAGCGGGACAGCCGGCCTCCAGCACCCgggctgattattattattcttaaacACGCTTTAAATAACATCATCCTTTAAAAACAGGAGCTGCAGAAGCTCCAGAAGCCccgcagcagagagagagagagagggatagagggataGAGAGGGGGAAAGTTGATGGtgcagaaggaggaggaggagaggagagagacccGGAGCTCGAGAGCGGGAGCGGGAGCTGGAGCGGAGCTGCGCGGGGAGAGGGAGCCGGAGACCCGGCAGAGATAAGATCCAGAGCCCGGAGGAGCagcgggaggaggaggagcgggagaggaaaaagaaaggagagatgCTGCTGATTGAAGAAGCATCCagaagaaagagataaaggaaAGAAAGGAGGAACGGAACGGGTTTGAGTGGAACTTCACaagaaaacaagataaaaaagaggaaaagtgCGAAGATTAAAGACTACAAATCAGCGGAGCCATGCGCGCGGACCCAGCCtgaagtgctgctgctgcttagcCGGGAGGAGACGCGATGCTCCGGGGGAGGCTGGGGCGGAGCAGAGGCGTGGGCTTGGTGGCAAGACGATGAGCCTCACTCGGGagagaaagacagggatgagagctgctgatgctgatgatcTACAGAGCTGTCGCACGTCTACAAGCACATCGACACATCCAACAGCATGAGGAAGACCTGTGGACTTTACTGCTTAACGTGCACGAGAGAAGATGTTCACCTGAGCTGTGTGAGGTCAACCAAGTCATAAAATCAGAATACTTTTATCACACACTCTTTTGGTGTTTAAATTGGTTTTTACCACCAATAAGAAGAACGTGAAAAACACTCTTCACACAAGCGAATGACTATAAGTGAATGACTATAAGCGAATGATTCCAAGCGAATGGATGGTTGATGGTCCAGATCCCGAGCGATGAAAGGTGTCCACCGTCCATGCTGAAGCCTCCCGCCcgcccgctctctctctctctccagctgtgGCACCAGTCGCCTCCCCATGCCCGCGGTGGTACCCAGTGCCATGCTCTTACAGGCGTCCCTCTTCCTCCACTGCGTCCTCCTGACTCTCGGCCAGTACGACATATGCAAGTCGCTGGTCAGCACTGACGATGGACCCACGTGGGAGTATTACGCCTGCCAGCCCAGATCCATGTCCATGAAGGACTACATGCAGGTCCGAGTGGACCCCCCCAACATCACCTGCGGGAACCCACCTGAGAGGTTCTGCACGCTGGAAAACCCGTACCTGTGCAGCGATGAATGCGACGCCTCCACCCCGGACCTCGCCCATCCGCCGCAGCTCATGCAGGACCGCGAGCGCAACGGCCTCATCACCTACTGGCAGACGGTAACGTGGAGCCGCTACCCGGAGCCGCTGCTGGCGAATATCACGCTGTCCTGGAACAAGAGCCTGGAGGTGACCGACGACATCGAGATCACCTTCGAGTACGGCCGGCCCACCATCATGGTGCTGGAGAAGTCGCGGGATAAGGGCAGAACCTGGCAACCCTATCAGTACTACGCCGACGACTGCTTCGAAGTGTTCGGGATGCATCCCAAGAAGGTGCAGGACCTCTCGGCCGCCAACGTGACGCGGGTCATCTGCACCGAGGAGTACTCGCGCTGGGTCGGCTCCAAGAACGAGAAGGCGGTGCGCTTCGAGGTCCGGTACCGATTCGCCATCTTCGCCGGCCCCAAGCTGCTGAACATGGACAACCTGTACACCAGGATGGAGAGCATGAAGGGCCTGCGGGACTTCTTCACCTTCACCGACCTGAGGCTGCGGCTGATCCGGCCGGCGCTCGGAGGAACCTACGTCCAGAGAGACAACCTGCTCAAGTACTTTTACGCCATCTCCAACATCGAGGTGCAGGCCAGGTGTAAGTGTAATCTTCATGCCGGACAGTGTACGTTCCGTGAGGGAAGTCTTCAGTGTGACTGTGAACACAACACCACCGGGCAGGACTGCGCTCGCTGTGAGAAAGGCTTCAAGGCCAAGTCCTGGAAACCTGGCTCTTACCTGCCCACCCCCAACGGCTCCCCCAACACCTgtgaaGCGGCGGGTACTCTTGGCACTCCTACAGTAGTAGAGTCCAGCCCTACTCCAGATAGCTCCACAGCTTTACCGCCCACAGGTCCAGCTTTAGCCACTGCTGACTGTGGACTGGCAACCTCACCTGCTGATCAGGTGACTGTCTGCGTAGACccgcccaccaccaccacagccGCCGCCCAGCTGAACACTGACGCCCAGGCCTCAGACGTGCCTTCAGTAACCACTGTGACAGGTTGGGAGCTGAATACGCTAGTTTAGAGTAGAGTAGTTTGTGTAGCTGGTGGTGTTTTGAGTCCTGTAGATCAGGGGTGTAGATGAAGCCCCTGGTTGGAA

Function

symbol description
ntng2a Predicted to be involved in several processes, including basement membrane assembly; cell migration; and substrate adhesion-dependent cell spreading. Predicted to be part of laminin complex. Orthologous to human NTNG2 (netrin G2).
ntng2 Predicted to be involved in several processes, including basement membrane assembly; cell morphogenesis involved in differentiation; and regulation of cell projection organization. Located in Flemming body; intercellular bridge; and plasma membrane.

NR:

description
PREDICTED: netrin-G2-like isoform X1

GO: NA

KEGG:

id description
K16359 NTNG2; netrin-G2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670588.1 True 3102 mRNA 0.57 8 36493507 36585412
XM_022670589.1 False 2570 mRNA 0.57 6 36493502 36559923

Neighbor

gene id symbol gene type direction distance location
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding upstream 161933 36296278 ~ 36331569 (+)
ift81 ift81,LOC106585468 coding upstream 203701 36262411 ~ 36289801 (+)
LOC103035951 LOC108438364,LOC107598973,LOC107757293 coding upstream 288399 36099455 ~ 36205103 (+)
fxn fxn coding upstream 412049 36072072 ~ 36081453 (+)
dimt1 dimt1,LOC107699721 coding upstream 522571 35965198 ~ 35970931 (+)
endog endog,LOC107736532 coding downstream 10604 36596016 ~ 36598896 (+)
LOC103040549 NA coding downstream 478987 37064399 ~ 37085499 (+)
LOC111192679 NA coding downstream 501030 37086442 ~ 37091387 (+)
LOC103044321 plekha2,LOC108414546 coding downstream 509302 37094714 ~ 37110794 (+)
LOC103040231 asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994 coding downstream 526129 37111541 ~ 37115408 (+)
G56812 NA non-coding upstream 80745 36412425 ~ 36412757 (+)
G56811 NA non-coding upstream 81287 36411930 ~ 36412215 (+)
G56786 rapgef1,LOC108265900 non-coding upstream 140223 36347626 ~ 36353279 (+)
G56756 NA non-coding upstream 249777 36171914 ~ 36243725 (+)
G56767 fnbp1,LOC108264955 non-coding upstream 265849 36227237 ~ 36227653 (+)
G56824 NA non-coding downstream 6481 36591893 ~ 36592976 (+)
G56852 NA non-coding downstream 163677 36749089 ~ 36751641 (+)
G56853 NA non-coding downstream 185404 36770816 ~ 36772871 (+)
G56859 NA non-coding downstream 222291 36807703 ~ 36875347 (+)
G56863 NA non-coding downstream 240355 36825767 ~ 36833046 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 528992 35956104 ~ 35964510 (+)
G56504 NA other upstream 1034625 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1209231 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1220974 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 1504217 34961800 ~ 34989285 (+)
G57066 NA other downstream 419861 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 2523832 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2706659 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 3381678 39967090 ~ 40090271 (+)
G57664 NA other downstream 3459241 40044653 ~ 40046467 (+)

Expression


Co-expression Network