LOC103045561 (phf19,LOC107557185,LOC107599052,LOC106585785)


Basic Information

Item Value
gene id LOC103045561
gene name phf19,LOC107557185,LOC107599052,LOC106585785
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36755166 ~ 36778310 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670593.1
CCTGAAAATGCTGCAGTGTTTCCGCTGTGAGCAGTGGTTTCACGAGGCGTGCACGCAGTGCCTGCAGGAGTCCATGATGTTCGGAGATAGGTTTTACTTGTTCATTTGTGCGGTGTGCAATAAGGGAGTGGAGTACATCAAACGCCTGGCTCTGCGCTGGGTGGATGTGGTCCATCTCGCCCTGTATAACCTGGGAGTGCAGagtaagaaaaaatactttgaacTGGAGGAGATCCTCAGCTTCATCAGCAACAACTGGGATCATTTCCAGCTGGGCAAGctcgCCAGTACCCCTCCCTCAGAGAGAGGCCAGCTCATCCTCGACGCTCTTAACAAGTACAAAAGCAAgttTCTTTGTGGAAAAGAAATCAAAAAGCGGAAATGCATCTTTCGGTTACGGACACGAGTTCCTCCCAACCCCCCCTCCAAACTGTTTCCAGAGAAGACCCCCAAACCCGAGGGCCGCCGGGGCTGTAAGAAAGGGGACGCGCTGAACGGTAGCTGTGCTCCTGCAGAGAAGCGGAGGAAGAAGAGGTCTAAATGGCTGCTGGAGGATGCTATTCCCAACAATGAGCTGACGTCCAGCTGGAGCTCCAATCATCACATGGCCAATATCTTCGACTTCACACTCGACGAGCTGCAGAGTCTGAAAAGCACCAGTTCCAGCCGGACGTTCAGTCTGGATCAGGACTCCACAGATGCTGCCAGCACTTCAGGCTCTGCCACCACTAGTGTTTCCTACGACTTCAGGAAGAACGTGGGCAGCAGGAAAAGGAAGTTGCCTTCAGCCAATTACAGCATGCTGACCAGTAAGAGGGAGGCGCTGGAGAGCGATCTGAGCCCGGTGGGTCTCCCCGGGGACGAGCCCCACGCTGCCAACGACAGCCACACCTTCGAGAGCCTCAGCGAGGACGACTCGTCCCTGTCTCACCTGAAGTCCTCCATCACCAGCTACTTTGGGGCTGCAGGCCGGCTCACTTTAGGGGAGAAGTACCAGGTCCTGGCCCGACGGATCACACCTGAGGGCAAGGTGCAGTACCTGGTGGAGTGGGAGGGAACCACGCCCTACTGAGGGGCTTTAAGGACgaagagaaagaggtagaagaggaagaggaggaggagaagaagaggaggaggattaGGGATAGTTTTAACAGTGAGTGTTCTTCACTTCCAGTCCTGGAGAGAATCACAGCACTGCACAGATCAGAGTCCAGTGGTTGCCCTGATTAAACAAACCTGACAAGAGCAAAACCATCCTTATCTtcaaaaaaacacttcaaatttattcatttttacgtTTCTTATTATcaataaaatgaattttattGATAATACAATCAAGAAAAGGAAATAGTTTAAGTTCAAACAAAGCCTGAATCTGTAGAGTGTGCCATTTcgattttaccacattaaaaaagcaagtttaattcatttaattaattgctatttttagaaTAATTTAGCCATTTTTACAGTTAAGTCCCTAGTCTGTAATAATTCGGTAGGAATCAACAAGGCATCTGACGGTAATAATAATGACTCCACCCTACTGTGATtctgttagttagttagttccaaccctgcaatgtgattggctgagagccGTTATATAagtaccgttatcagccggtaatg
>XM_022670594.1
CCTGAAAATGCTGCAGTGTTTCCGCTGTGAGCAGTGGTTTCACGAGGCGTGCACGCAGTGCCTGCAGGAGTCCATGATGTTCGGAGATAGGTTTTACTTGTTCATTTGTGCGGTGTGCAATAAGGGAGTGGAGTACATCAAACGCCTGGCTCTGCGCTGGGTGGATGTGGTCCATCTCGCCCTGTATAACCTGGGAGTGCAGagtaagaaaaaatactttgaacTGGAGGAGATCCTCAGCTTCATCAGCAACAACTGGGATCATTTCCAGCTGGGCAAGctcgCCAGTACCCCTCCCTCAGAGAGAGGCCAGCTCATCCTCGACGCTCTTAACAAGTACAAAAGCAAgttTCTTTGTGGAAAAGAAATCAAAAAGCGGAAATGCATCTTTCGGTTACGGACACGAGTTCCTCCCAACCCCCCCTCCAAACTGTTTCCAGAGAAGACCCCCAAACCCGAGGGCCGCCGGGGCTGTAAGAAAGGGGACGCGCTGAACGGCTGTGCTCCTGCAGAGAAGCGGAGGAAGAAGAGGTCTAAATGGCTGCTGGAGGATGCTATTCCCAACAATGAGCTGACGTCCAGCTGGAGCTCCAATCATCACATGGCCAATATCTTCGACTTCACACTCGACGAGCTGCAGAGTCTGAAAAGCACCAGTTCCAGCCGGACGTTCAGTCTGGATCAGGACTCCACAGATGCTGCCAGCACTTCAGGCTCTGCCACCACTAGTGTTTCCTACGACTTCAGGAAGAACGTGGGCAGCAGGAAAAGGAAGTTGCCTTCAGCCAATTACAGCATGCTGACCAGTAAGAGGGAGGCGCTGGAGAGCGATCTGAGCCCGGTGGGTCTCCCCGGGGACGAGCCCCACGCTGCCAACGACAGCCACACCTTCGAGAGCCTCAGCGAGGACGACTCGTCCCTGTCTCACCTGAAGTCCTCCATCACCAGCTACTTTGGGGCTGCAGGCCGGCTCACTTTAGGGGAGAAGTACCAGGTCCTGGCCCGACGGATCACACCTGAGGGCAAGGTGCAGTACCTGGTGGAGTGGGAGGGAACCACGCCCTACTGAGGGGCTTTAAGGACgaagagaaagaggtagaagaggaagaggaggaggagaagaagaggaggaggattaGGGATAGTTTTAACAGTGAGTGTTCTTCACTTCCAGTCCTGGAGAGAATCACAGCACTGCACAGATCAGAGTCCAGTGGTTGCCCTGATTAAACAAACCTGACAAGAGCAAAACCATCCTTATCTtcaaaaaaacacttcaaatttattcatttttacgtTTCTTATTATcaataaaatgaattttattGATAATACAATCAAGAAAAGGAAATAGTTTAAGTTCAAACAAAGCCTGAATCTGTAGAGTGTGCCATTTcgattttaccacattaaaaaagcaagtttaattcatttaattaattgctatttttagaaTAATTTAGCCATTTTTACAGTTAAGTCCCTAGTCTGTAATAATTCGGTAGGAATCAACAAGGCATCTGACGGTAATAATAATGACTCCACCCTACTGTGATtctgttagttagttagttccaaccctgcaatgtgattggctgagagccGTTATATAagtaccgttatcagccggtaatg

Function

symbol description
phf19 Predicted to enable DNA binding activity; chromatin binding activity; and methylated histone binding activity. Predicted to be involved in chromatin organization and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human PHF19 (PHD finger protein 19).

NR:

description
PREDICTED: PHD finger protein 19

GO: NA

KEGG:

id description
K11486 PHF19, PCL3; PHD finger protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670593.1 True 1638 mRNA 0.49 9 36755166 36778310
XM_022670594.1 False 1635 mRNA 0.49 9 36755166 36778310

Neighbor

gene id symbol gene type direction distance location
LOC103045855 LOC108438352,LOC108265896 coding downstream 113603 36605407 ~ 36641563 (-)
med27 med27,LOC107665006,LOC107557205,LOC107725311,LOC107757301 coding downstream 262452 36412872 ~ 36492714 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding downstream 369669 36344602 ~ 36385497 (-)
anapc7 anapc7 coding downstream 414663 36332468 ~ 36340503 (-)
c6h9orf116 LOC103023176 coding downstream 545507 36208216 ~ 36209659 (-)
LOC103045252 LOC108438351 coding upstream 18420 36796730 ~ 36818211 (-)
LOC107197187 NA coding upstream 265491 37043801 ~ 37048616 (-)
slc2a6 slc2a6,LOC107599026 coding upstream 272410 37050720 ~ 37061698 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 612132 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 769449 37547759 ~ 37599298 (-)
G57012 NA non-coding downstream 151738 36600038 ~ 36603428 (-)
G57010 NA non-coding downstream 342417 36411235 ~ 36412749 (-)
G57013 NA non-coding downstream 346714 36408175 ~ 36408452 (-)
G57001 NA non-coding downstream 414130 36298059 ~ 36341036 (-)
G57043 NA non-coding upstream 47457 36825767 ~ 36839252 (-)
G57107 NA non-coding upstream 265017 37043327 ~ 37058088 (-)
G57121 nras,LOC107598969,LOC107725308 non-coding upstream 339134 37117444 ~ 37207042 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding upstream 396991 37175301 ~ 37181186 (-)
G57149 bcas2,LOC107566810,LOC107734517,LOC107674303 non-coding upstream 406130 37184440 ~ 37186552 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 8532 36680166 ~ 36746634 (-)
G57014 NA other downstream 351868 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 434471 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 493621 36226129 ~ 36261545 (-)
unc45b unc45b other downstream 747179 35993525 ~ 36007987 (-)
LOC111192678 phf19 other upstream 6998 36785308 ~ 36792444 (-)
brpf3 brpf3,LOC108265695 other upstream 502803 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 523737 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1482807 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2743234 39521544 ~ 39562921 (-)

Expression


Co-expression Network