LOC103045252 (LOC108438351)


Basic Information

Item Value
gene id LOC103045252
gene name LOC108438351
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36796730 ~ 36818211 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670596.1
GCTGAATCCACCTCCTCCTCTGCGCTCGTCTTTATATGTGTTAGTCTCtgttcctctgtgtgtgtgacggagtgtgtgtgtgtgtgtcggagagtgtgtgtgtgtgtctgggagCTCCAGACGCTCTCGTGGAGTGTGTCGGTGTGTAGCCGGCTCCATGGCGTCCTGCCCCGGGGAGAACGAGTTCCCCTGCGGGTTTCCTCAGAGCATCTGCGACGACCTGCCCCCCGTACACTTCCTCTGCAGCAGCTGCAACAACGTGCTGAACGAAGCCCACCAGACCCAGTGCGGACACCGGTACTGCCGAGCCTGCGTCATGTGGCTCCTCAGaaataataaggaTCTGATTTGTACGAAGTGTAAAGAAGATCCCGGCAGTGAGAGTGACTCCAGCATGATGCTCACTCTGGACCACTTCTTCAGTGATAACGCCATCAATAAAGAGATTCAGGAGCTGAGGGTGCACTGCGTCAACCAGGGCTGCGGCTGGAGGAGCACCCTGAAGGACTTTGAGGATCACCAGAGTCAGTGTGAGTACGCTCTGATCCCCTGCAACATCGGCTGTGGTCTGATGGTGCTGAGGAAGACTCTGGCCACTCACCTGGAGAAAGGATGTCCCAACAACAAGACCACATGCCAGGTGTGCTGCTCCGCTCTGACCCCTGCTGAACTGCAGAAGCACTCTTGTTCTAATGGAACTGAGAAGGATCTGTCAAAAGCAGAGAAACGAAAGAAGgACAGTAAGCAGGAAAGCCCAAAGCGGAAAGAGACGTGTGTCTTTTCTGAAATCGGATGCACGTTTAAGggtAACCCGGATAAGGTCCGTGAGCACGAGGTCAGCAGCACCAGCGCTCACCTGCATCTCCTGGTGGAGGTCGTCAGGAACGTCCAGATGTCGGTCCCGCCCCCACCTGAGAGAACTGTCCAATACCCTGCTCTGGATCTGCACCTCCAAAACCAGGACATGACCCCCCTTCCAGACATCACTCTGAATGGCGGCGAGTTGGAGACGGACAGCGGGGACACGGGAGCCAACGATAAAGCCCTGAGTCTACACGACGACCAGGCCGAGCTGGAGGTGGGTCAGCAGCTCCACGCCCTCCAGCAGAGGCTTCAAATCATGGAGAACATCATCACAGCTCTGAACCGAGAGGTGGAGAAGACCCAGCTGACCGTGGTGGTGCTGGAGAGAGACAACCACAACAACATGAACCTCATCCAGCACCTAGAGGCTGTGGtagcggagcagcagcagagactgaTCAGGAAAGACCTGCAGATCTCCTCCTTACAGCAGAGCATCAGCGCTCAGCAGGACGTCTCCTACGACGGCACCTTCCTCTGGAGGATCTGTGATGTCAGTCAGAAGCTGAAAGAAGCTGCCACAGGGCAGAAGAGCAGCCAATACTctccagcattttataCATCCAGATACGGCTTTAAAGTCTGCATGCGGCTGTACATGTACGGAGATGGAGTGGGGAAAGGAACGCAcatctctcttttctttgttaTTATGAAAGGAGATTATGATCCTCTGCTTTCGTGGCCCTTTAAACAAAAGGTGACGTTCTTCCTGATTGATCAGAATCAGAGGGAACACGTGGTGGATGCGTTTCGTCCTGATCTCCGCTCTGCGTCTTTCCAGCGTCCCGTCTCTGAGATGAACGTGGCCAGCGGCTGCCCGCTCTTCTTCCCTCTGTCTAAGCTGCGTTCGCCCAAGCACGCCTACGTGAAGGACGACACGCTCTTCATCAAGTGTGTGGTGGATCCGTCCTACTGAGCGGAAAAGGACTAACTGCATCAACACTGTTTAAAACTAACGATTTAAACCCAGATTGGAATTTCTTACTtcaatatttattgattttaatagcTCAGCTATTTTGAGGCAGTCTTAAAATAGTTAATTGCCTTTACTATAATAAGGTACgggtatatatatgttttttttatacatatattttttatatctttaatatttatttttttatgaaactgAATGTACATTTGATgccaaaaacatgcaaaaaaaaagtgattgtaGCAAATGACACACATTttcaacacattttcaataacaaataaaatctgATGAATAAA

Function

NR:

description
PREDICTED: TNF receptor-associated factor 1-like isoform X1

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0051092 positive regulation of NF-kappaB transcription factor activity biological_process
GO:0007165 signal transduction biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03172 TRAF1; TNF receptor-associated factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670596.1 True 2103 mRNA 0.50 11 36796730 36818211

Neighbor

gene id symbol gene type direction distance location
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 18420 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 155167 36605407 ~ 36641563 (-)
med27 med27,LOC107665006,LOC107557205,LOC107725311,LOC107757301 coding downstream 304016 36412872 ~ 36492714 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding downstream 411233 36344602 ~ 36385497 (-)
anapc7 anapc7 coding downstream 456227 36332468 ~ 36340503 (-)
LOC107197187 NA coding upstream 225590 37043801 ~ 37048616 (-)
slc2a6 slc2a6,LOC107599026 coding upstream 232509 37050720 ~ 37061698 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 572231 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 729548 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 812846 37631057 ~ 37635455 (-)
G57012 NA non-coding downstream 193302 36600038 ~ 36603428 (-)
G57010 NA non-coding downstream 383981 36411235 ~ 36412749 (-)
G57013 NA non-coding downstream 388278 36408175 ~ 36408452 (-)
G57001 NA non-coding downstream 455694 36298059 ~ 36341036 (-)
G57043 NA non-coding upstream 7556 36825767 ~ 36839252 (-)
G57107 NA non-coding upstream 225116 37043327 ~ 37058088 (-)
G57121 nras,LOC107598969,LOC107725308 non-coding upstream 299233 37117444 ~ 37207042 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding upstream 357090 37175301 ~ 37181186 (-)
G57149 bcas2,LOC107566810,LOC107734517,LOC107674303 non-coding upstream 366229 37184440 ~ 37186552 (-)
LOC111192678 phf19 other downstream 4286 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 50096 36680166 ~ 36746634 (-)
G57014 NA other downstream 393432 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 476035 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 535185 36226129 ~ 36261545 (-)
brpf3 brpf3,LOC108265695 other upstream 462902 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 483836 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1442906 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2703333 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 3299578 40117789 ~ 40119095 (-)

Expression


Co-expression Network