LOC103040549


Basic Information

Item Value
gene id LOC103040549
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37064399 ~ 37085499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670598.1
GACAAATACGACTCATGACTCATGGCTCAAAAACACAGTGGTGGAgagtttttcaagttttttagCTTTGATTACTAGGACAccgttttattaaacacactaaaaaaatctttattagtTAACTAGCATTAATTAATCtcagttaattatattagtaGAGTGTTAAATTGGAGTTTAGCAGAGGGCAGCAGTCGTATCGATATTGGTTAATCTATATTAGTAGACTGTTGAGGTTAGCTTTGTAGCAGACTATGTGCAGCATTTCGAGAACtaagtcgtaatattatgagaataaagtcgtaatagttcgactttattctcatacatgacaactgtttttatttaagagGCTCTAAAACGCGGTGGTAAAAAGTATGAGTTACCTTCCTAGCTTGGATTACTAGGACGCCGTTTTATGAACACACTGAAACCCCTTAAATTAGGTAATTAGCGTTAGTTAAACTATATTTAGGGGAAGCAGTAATATCGATATTAGTTAATCTATATTAGTAGAGTGTGAAATTAGagtttattagtagtagtagtagtaatatcgCGACCACCAGCGCGGAAAAGTGAAACAGCAGGCAGGAGGGAGACGCACAAAATGGAGGCGGCCGTTTaactttctgtttctttttcgaTTCTCGACGCTTCTCAGGAGCGGAGCGAGGCGGCGGGCAGCGCGGGCAGGGGGCTGGTAGCCGGCGTGCGGCTCCGGGGGACTGATATCCAGCTGTTGGGGGGGATATCTGAGCTGCAGTGAGAGTTACAGAgttaaatactaataataagtGTGATAAACTGCGAGCTGCGCGGTGTAACGTTAGCCGTTAGCCTGGTAGGCTAACTGTAggttttagcttagcttagcttagcctagctgtTTGGCGAAGGTTCTTCCTGGTTGCACAACCAGCCCAACTATACAGCCCTCAGGCCATCCAACCAGTTTATTCAGTTACAGCCCTGCTCACAAAATACAGCCTTTACCCCGCTGGAGACCACCATGTTCACCTTCGGATAAGCGCTGTGAGGAGTTAAAGCTTCAGTTCTGGGGTTTGAGTCGAAGCTGAAGACGCCTGGAAGGAGAGAAATGTAGTTTAaggaaggaaaagcagcaagaCGAGAACAAACACCAGATGCCTCGCCTTCATGGAGAATGACGCTACCCTAGCTAAAGAAGGTCTTCTTGAGCCTGTACTTCCAGGCTCAGTAACCTTTGACAGCAGTATTTTAGCGCCTCTACGGAACAACTACTTGTATGAGGAGTCCAATGAGTGTTTTACTTACAGTTCAGCGTATTTGATCAATAGTGCAAAACTTCAAGAACGGTATTCTGCTTTCCGAgctgagaaacagaaaaatggCTACTCTAAAGGGGAACTGGAAGAGTCTTTTGGCTTCTTGTTGTTTGATGAGAAATCCAGGGCAAATACACTTGCGGATAATGGATTAATGGTGGGACAAGGGACATGCACCATTCTCGGAGATTCCTCAAAGGGTGTATATATTTCGAAGTACTCTGACTGCCTTGACCTGAAACGCTGGTATGATGGCAAGACCGGCTACATTGTCCTCCTAAAGTTGACAAAGGGTCGAGTTAAAGAGGTGACGGAAAACTACACCCAGAACTTCACGCCTCCAACCGCTGGCTTCGACTGCCATGTGTCCGACCAGCTCGGAGCAGTGTGCGCCACCACCAGCTCTTTCCTGGCTTTCGAGCGGACTCAGtattatttgTATGAGCTGCTGGATGGAGGAAATAAGCCTGAGCCGTGTCCGAGGCACGTGTGCCCATTCGCTGTCGTGGCCTTTTCTTATGGAAAGACTTCCACCTCACTACAGCTGAAAGAGAAAAGTCAAGAAAAAACATCATTTCATTACCAACCATGGAGTGGCCAACTCAAGATCGAGTCTGTTGTATACAATGTTGGGTTGCAGTCCATCCATGGAGCCACGTTCCCCGCAAATCTTTCTAAAACAGTTAAAGTTGACCACGCTATTGGAGTCTCTGAGCTGAGGAAGACGTTACCCCAATCAATTTTTGAAACTTCTTTTCTCGGTGAAGtCTCTCTGGACAGCAGATGTTTCAGACTGTATGATGTCGTCTCCTTGGAAGAAAAGAGCGATCTGTCTCTTTTAACTCAGGAGTTGGAGGAGAAAGATTTGGCCCTTGTTGTATGTTTAGATGATGGTGGTTTCCTTATAATATTGCATTCGTCGCATTTCTTGTCTTACGAAGGTGTTGGAACTGATAAGGCCTCTGGTCTTCAAGGCCTGTTCATTTTCCCTGACTCCAGAACAGTACCAAGAGAAACCAAGAGGCCACACAGCAAGCCTAAGATTTCAGCTGAGGTTCTCCGGGTCCTCCCAGCATTGAATTACGCTGAATCAGAAATGGAGAAGTGTCCTTCAAGTCAGCAGGGAGAGCCCCTCGGCACAGTGGAGAAGCATCTGCAGAACTTTGCTACGCTAATTTTACCTGGACTGTCAAGCAGCCCTGCTCGGGAAGCCAGTATGTTTCCAGACCAGTACGATGTACCTGATGGTTTCCCATTGATTGCCCCAAAATGGACAGAAGGTGCTGGGGCATGCTTAAAGAAGTACTTGAACAATCCATGCGGCTTTGTGATTCCGGTAGCGAGGGCTGTGGAGCTCCTTGTTCCTGAAAAACAGCAGCGCAGTGATGACGATCACGATGACGATgtctattattatatatcttcACCTGAGGAGGCTCCTCAAACACCTGCTGGCGTGGCTGTGGCTGAGGAAGGGGATGTGGCGGAGGAAGCTGCTGTGAGTGGAAGTAATAACGAGGAAGTGAAAACCACCACAGTCGTCAAAGAGCAAACTGAGAATCAGAAAGAAGTGCCTGCAGATGTGCCTCACTCTGCTTTGCAAGAAGAGGATGGCACACCTGGTACAGTGGTGGTTGTGGTATCTTCTGAAAACCCTTTAAACAGGACAGATTCCTCACCTACGTCGAGGGAATTGCTTGAACAAAGTGTTGAAATGGTTGCAGACAGTGAAAAAACACCTGAGAATGTCTCAGCTAATGATGCTAATGAACACAGTGGAGATACAGTGGAGTCTCCACAAGAAATCTCAAAAGAAACTCCACTTCAAACCACAAGTGAACCTTTAACAGAAGAGAAAAGTGATGTCTCGAGTGATGTGGTGGCAGCTAAAGTGGATGGAGCCAATCCACATCCTGAAGTAGAAGCTGAGATGCTTGATGATGATATTTCTGGGAGTATACCTGTTGTGGACAAGGACGTTCCAAAAGAAGCAGATCTTCCGATGTCTGTTTCAGCTTCTACTCCGTCAGAAAAACAGATTGAAGAATTGGTTGTAGAAAGTGAAAAAGTAGAACCGCTAACAAACAGCACTAATGTTTTACCTCATAAAAAGCGCAACACGAAACATTTACAGGGATACCGCAGAAGGAAAAGGAAGGGTCTGAAACGGAGTCTTAAGCAAATGGACGAAGCATCAGCTGGACCTGATCACaacactactactaatactacgcCTGGACAGAGCAGTAGTAGTGAATTAGTGGTTGATTCCTCACACAGCGATCCGCTGAGAAAAGACTGGCGTTCTCTCCCAAGGCGTAAGAAGCTCTGGAGTCCTGATGATGGTAAAAAGCGGGCATTGAGGTCCATTGTCAAGAGCAGTGAAACCAGTGAGACCTCAGTGGAGAAAAGTAAAAGTCCCACCATTACAGAGCCGCCGAGTATCACAGAAAGCAGTGTGTCCAGCACACCGAAACGAAAAATGGAAGGCTTTAACATGAGAGAACGATACGGGCTCAAGACCATAATCACAGACTGTGGTTTTGTCTTTGTTCCCCATGGATCTGAAGTTGCAGAAGCAGACATAAAAACGTCTCAAGATTTAAAAGAAAGCAAAGACTCTTCCTTGGTCTCTACTACCAGTCCTGTAAAGGATAAACCAGAGAAAAATGACTCACCGATCATACCTTTTCCATTACAGCTGGATAAGGACGATCAACATTCGCCCCTAACACACATACTACAAAACCTTCCCATCAACACAGCAGCTACAGCTCCATCTTCCCAACAAATTTCTGAGAAAGATTCCAGATCTGTtcagaaaaatacagaacagtCACCGACTCCTGAGCCCAAAAAAAGCGTCTACAAGGCAATTTCCATCAGTAAACTAAAGACTGTGCTCAAAAGAGCAAGACAGACTAAATCTCAGGAAAAATCAGAATCGGATAACACAGAGCCTGAACTGAAAAAGGACAAGCCGAGCACAGATGTGGACTTGAACAAATCTGAGAGTGGAAAGTTGAGTCCTCTGAAAGAAGTGAATAAACTGACTGCTAATGAGCCGAGCAAAACTACACCGTCCAAAAAAGTCCTTGTGTCTTGGAGAGAGCTTAAGAGCCCGCCGTCTCACGAAAAGCTGAAGCCGAAAGAAAATGGATGCATCACGTTTGGCCCTTCTGCCCCAAATGAACTAGTTAAACAAGCTGGCCCACAGCCCGTTTCTGCACTTACTGGGAACAGGGTGGTAGGAAAAGCTGTTAGCTCTGAGGGCAAAAGCAGTAAAGCGGCACTGGCCACCAGCCCACCCCTGCATTCTGATGCTCTTAATCTTCTGGCTGATTTGGCCCTCAGTGCGAATAGTGAGAAAATGCTGCCTAATCCAGCAAAAGCCAGAAAGAAGAGCCATGCTGGAGCAAAGACGAGTAACTCGCCGGAGTCGGTCCTTCACGCTCTGTTGCGAGGCTCTTCTGCCAAATTAAAATTACCCCCCCAGTCCCCTTTTCCAGAGAGTCTTTTAGTACCGGGGGAACTGCTGTTGGAAATATCAAAAGAGCATTCTTACTCACAGCCCGCCTCTCTGCTATCAGGTTCATCAGGAGCGCCCCCCCAGTTTCGCCCTCCTGCTGGATCTGTTGGCTCTCTTCTCTCCTTGGACCCTAAGCTCCACCTGAAGTTACCACATCACAGTAGTGGCACAATCTAtgaggagagaggaggaaaaaatGGATGGAGACACCGGGCATCCTTAGATGTTCCCCACCCATCCTCCAGAGTACAAAGGCCGAGGTCGTTCCACCACCGGCACGTCATTGAAAAAGATGGCCTGCTGCAAGTTGCGAGACTTTGGAAAGAAAAGTATGACTGTAGATTTGACAGCAGGTTCACGAATGACGCTCTGGAGAAAAGCGTGACGAGAGCGCTGCATGGCAAATGGGATTTCGGCATTGAAGACACCTTTGAGCAGGTCCATCTCATCTTCCATATGTGGATAGGTCTTTTCTACAGCAAGCGCACCTCAAGGTTCTTTCACTTTGACCAGAACTGTGCACCTCTAGAGAAAAAAGACCCTCCACATGTTCCCAACACTATCAGTCCAATTCAGGCTGCTTCAAAACAGCCTGGCGTTCATTTGAGTTCCAAAGAGGACAAAGACGATTCATTGCGTCCTGCAGCAGATATTCTGGATCTGTCAGTCAAAACGTCTGGGCCTTCCAGTAACTGCACTGTAACACAAGGAAACAGTAAGGAGAGACCTGCAACCAGTTCTGACACAAAAACAAGTCTGGTAAACACAACAGAAAGTAAAAAGCCCAGTACCACGGACAGTTCACACCAGGCTCCTAATGTTCCTACAAAATTACCTGCTGTGGATTACAGACCAGCTGTAAAGCCTGCAGAAGACAGTTTTGGTTATGGATGTTGATGAAAGTGATGGAGAGAACGACGCCACCACTGAAACCCCTTACACAAAACTCTTGGAGAAGAACAGTGCATACAGTAATCTGTGTGAACAGGCATCAAATATGCACATAGAAGACTTGAAATCATTGAAAGGGCAGATGAATGCACCTGTGTGCAACGAGCAAAAAGTGCCAGAGGCCCTTAATATGACCCAAACTTCTATGAAAGTGGCTCCGTGCATAGTCCCAACCTTTGATCCAAGATCTCTCACTGTATTCCACCAGGTACTTCTGCCTATTGGGCCTGTGATTCTCTTAAAAACGTTTGATCCAGCTCCTGAGAGAAAAATCATACTGGGTCCACAGAGTATAAAGGACAATACTGGAGCAGTTACGGTGCCTGCATTAAGGCCCAAAGAGGTTGTGTCTAAAGCTCAAGGTGGAGCAGCACTTCAGACCCTGGAAAACAATAATCCTTCCAGGTCTGTGGTTTCTGATGGATCTAATGTTAAAAAGAATGCACAAACTAAAGTCATATCAGTGCTTGATGGCAAAGATAAAACATCTGTGGACACTGACAAAAAATAGTCCACGAGACAAAGAAAGATCTGAGCCTGATATCAAAGAAAACACGCCCATGTCTGTGGAACTTGTGGAAATTGACCAAAAACCTGTGCTTGATGTCACAAAGGACATACCTGTGGATGAGAGTTTAGTTAAGGCAAAGGATGAGATCACACCTACGAGAGATGGAGATGAGCATGCACAGAATGATGGGAATGAGCCACTGAGGATGCACATACTGTTCAGACCACAGACAAAGAAATGCAGATGCCTGAGGTCAAAGATCCAACCTCAAAACCAGATGCTGGAGAAGATGTTTCAATGCATGACCCAAAACTAGATGCTAGAAAAGATGTTTCAATGCATGACGAGAAAAACGTAAATGTACGTGAAACAAACAATAAGGAAAAACAGGCTGAAGTTATACCTGTGGACGAGTCCAGTGTCGGCAAAATTGCAGATGTGCAAGACGTAATCGATAATACTGAGGTTGGAGATGGCTTGCCTGAAAGTTTGCAGAACGTAGATGatgaaggaaaaacagaaaaagaaaaagaagacaaagaagaagagaTAAGACCTAAGCCTGATGTCGTTGATCGCACTTCTGTGGATGAGGGTCATGAtgatgaccaaaaaaaaagcatggaagttgaaatgaatgaaatggTTCAAGAAGATGCCGCCAAAAATGACCTCAACGTCTTGgaggaaaatgagaaaatcGATAAAGTTGCGTCTGACAAGATAAAAGAAAGTCATGAATGTGAGAAAACTGAAGAAGAACAACATGGAACAGCATGTGATGACCATGCAAACAGCGAACTTGACTCAAATGTTCATGTCTCAGAGTCTCGTGTGTCTACATCAGAAAAAGACTGCACAGATTGTGTGGATATGGAAATCTCTGATGGGAAGGATTCAGAGGATGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670598.1 True 7205 mRNA 0.45 17 37064399 37085499

Neighbor

gene id symbol gene type direction distance location
endog endog,LOC107736532 coding upstream 465503 36596016 ~ 36598896 (+)
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding upstream 478987 36493502 ~ 36585412 (+)
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding upstream 732830 36296278 ~ 36331569 (+)
ift81 ift81,LOC106585468 coding upstream 774598 36262411 ~ 36289801 (+)
LOC103035951 LOC108438364,LOC107598973,LOC107757293 coding upstream 859296 36099455 ~ 36205103 (+)
LOC111192679 NA coding downstream 943 37086442 ~ 37091387 (+)
LOC103044321 plekha2,LOC108414546 coding downstream 9215 37094714 ~ 37110794 (+)
LOC103040231 asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994 coding downstream 26042 37111541 ~ 37115408 (+)
nras nras,LOC107598969,LOC107725308 coding downstream 31920 37117419 ~ 37126020 (+)
ampd1 ampd1,LOC107664993 coding downstream 41436 37126935 ~ 37150039 (+)
G56859 NA non-coding upstream 189052 36807703 ~ 36875347 (+)
G56863 NA non-coding upstream 231353 36825767 ~ 36833046 (+)
G56862 NA non-coding upstream 234909 36827530 ~ 36829490 (+)
G56853 NA non-coding upstream 291528 36770816 ~ 36772871 (+)
G56852 NA non-coding upstream 312758 36749089 ~ 36751641 (+)
G57088 NA non-coding downstream 145491 37230990 ~ 37233036 (+)
G57209 NA non-coding downstream 302590 37388089 ~ 37391366 (+)
G57212 NA non-coding downstream 388497 37473996 ~ 37474778 (+)
G57227 NA non-coding downstream 391733 37477232 ~ 37548787 (+)
G57229 NA non-coding downstream 400872 37486371 ~ 37546259 (+)
G57066 NA other upstream 58601 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 1099889 35956104 ~ 35964510 (+)
G56504 NA other upstream 1605522 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1780128 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1791871 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 2023745 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2206572 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 2881591 39967090 ~ 40090271 (+)
G57664 NA other downstream 2959154 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 3589541 40675040 ~ 40680555 (+)

Expression


Co-expression Network