LOC111192679


Basic Information

Item Value
gene id LOC111192679
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37086442 ~ 37091387 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670599.1
GTTAAAGAACTCGAGGAAGCCAATTCTCCAGCAAGAGGGAGTTTAAAGATTTCTAAAGATATCCAGCTTCAAAAAGACCGATCTGACCTTTGGTCCAAGCAATACGAAGCAGAGTCATGGATGCGTGGGTCTAGCTTCAGCACAGATGAACCGTATAATCTCAGGGAACCCTACGCATGTGATGAGGATCCAGAGGCTCCTCTTGCACAATTCAGAAACAGTACCTCTATTCATAGAGAACTTGCACAAAAGCCAAGAGAGGCTACAGAGAGTGATTCAGACATTCCTGACTGGGTACACGACTTTCACTATGCAGCGTCCACATCCACTGTGGCAAAGCCAAACAAAAGAGCTTTTCCTTTCAGACATCAAGACGACGATTCGGATTCATCCGGATCTAGTGACGACTCAGATGTTTGTTACAGAACAAAGAAGCGTAAGAAAGCTTCCTCTAAAGAAAAGTGGGATGAAGCTTCAACGTACAGCATAAATAAGACCATTTCCAGTGGTGTAGATCGAACTAAAACCTTAAGGACGGTCACCTGTAGCCCGTATCATCAGAAAAGAGACAGCAAACAGTCTTTTGACTGGCACAGATACTTCAGGAGGGAAGGAATATTTGATGCAGGAGAGAAGAACCATACGTTTGTCCAGAATCCACCATCTTCGATTGTCACAGTGCTCGACAAGGAAGGAAATCGAGTCATATATGAAAATGCTTCCTCTTCAAAGCGATCATCAGGTGCAACAGGTGGAAGGCTAAATACAGACAACACCCAGTCTGTAATGGAACAAGAGTATCTCGTCTTCTCTGAGAACATGAACCAAATGGTAAAATCCTGCAAGGCTTCTTCTTCCAGAGAAAAGTCGCACCACAGATCGTCCCTCAACCCAGCTGAGAATCTCATGACCATTCAGTTTTCGAGACTCGACGAGCAGGAGAGCTCCAGTCAGTTTGACGGCATGTGGCCGAGTCTTACGAATTTTAAGATAAACGTGGACATGTCTGAAAGGAAAGGTTCGAGAGAGACGGGGAGTTACGGTAAACCCCTGCACCTCCAGAGCCTTTTTTGTGAAAGCGGCAGTGAGGCGTCCTGCTCCAAAATATCAGACATATCAAAAGAGTGCGCGAAGTCCTACAGCAGCATGATGAACGATGTTTGTACCAAAAAGAAACTTCCTCATCAGAAAGGAAAGATGCAAAGAAAGTGGGATTCGGAGAGCACTCCCGTCAGCAAGCAGCCGGCATTCTGCGGCCGAATCAAAAAGGCCATGTTCGACCATCTGCATGACAACCTGAACTCGATTGTGAGGCAGTCGTGCAAGATTAAGTACAAGTTCTTCATCCTCGTTACATCAGACGATCCATTTTTTAAGGAGACAAAGGACTTGCTGGAAGCAGAGGGACACACGGCTGTTGAGCCTTATGAGTTCGACATTGATGACAACGAGCAAACTCCTCTTATTATCATAATACGAAATGAGGACATTGCTGAGCACATATGTGAAGTCCCACATTTGCTTGATCTGAAAAAGTCTTCGAGAGTCCTGTTTGCAGGGATTGACCAGCCGGACGATGTTGTGAACCTCACACATCAAGAACTCTTCGCTAAAGGAGGCTTTGTTGTAGTTGATGAAACCGCTTTCGACACCCTGAGTTTagAGCACATGAAAAAGGTCATGGGCATTATGGAGGAACTGGATAAAAAAGGGAAGTGGAAATGGTTTCTGCACTACAGGGACAGCCGCAAGCTTCGGGAAAATGCAAGATGCAGTCCTGAGGCACAGATGAAAAAGCATTTCATGGACTGCTGTCAGGAAGCTGGGATTGTGGAGGTCCTGCCCTATCACGAGTGTGATGTCATTTCACGAGACAGGCCGGACTACCTTCGCTGTCTGGTTCGTCTCCAGATCCAGAATGCCTCTGCGCGGTTCCCTGTGTTCATTACAGATACACAAACAGAGTCTTTTGGGAAAAATGGAATTTTAACAATGAATATTTACACGCTGTCACGGATTCTTTCAAACGACACATGTTCCGTTTCTTAATGCTAACTGTAAATGACATTTAGGCATTGTTTTCTATAATACGGTAACTTGCCATTGGGCGAGTGCCTCTTGTTAATAGTATAAGTTATTATGCTGTGAATATGCTAAACCTGTAGAAGTATAAACATGTAAAGAGTCTCATATGTTTcagttttaaatactgtaaaaaacaaaaagaaatgccAATGGTATTTTAGTgtattctttgttttctttcataTGGTTTTATAAATCATATTGACAattctaattttaataaaaacactttgttTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670599.1 True 2325 mRNA 0.43 6 37086442 37091387

Neighbor

gene id symbol gene type direction distance location
LOC103040549 NA coding upstream 943 37064399 ~ 37085499 (+)
endog endog,LOC107736532 coding upstream 487546 36596016 ~ 36598896 (+)
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding upstream 501030 36493502 ~ 36585412 (+)
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding upstream 754873 36296278 ~ 36331569 (+)
ift81 ift81,LOC106585468 coding upstream 796641 36262411 ~ 36289801 (+)
LOC103044321 plekha2,LOC108414546 coding downstream 3327 37094714 ~ 37110794 (+)
LOC103040231 asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994 coding downstream 20154 37111541 ~ 37115408 (+)
nras nras,LOC107598969,LOC107725308 coding downstream 26032 37117419 ~ 37126020 (+)
ampd1 ampd1,LOC107664993 coding downstream 35548 37126935 ~ 37150039 (+)
LOC103044036 dennd2c,LOC108438557,LOC107566809,LOC107725285 coding downstream 59862 37151249 ~ 37182523 (+)
G56859 NA non-coding upstream 211095 36807703 ~ 36875347 (+)
G56863 NA non-coding upstream 253396 36825767 ~ 36833046 (+)
G56862 NA non-coding upstream 256952 36827530 ~ 36829490 (+)
G56853 NA non-coding upstream 313571 36770816 ~ 36772871 (+)
G56852 NA non-coding upstream 334801 36749089 ~ 36751641 (+)
G57088 NA non-coding downstream 139603 37230990 ~ 37233036 (+)
G57209 NA non-coding downstream 296702 37388089 ~ 37391366 (+)
G57212 NA non-coding downstream 382609 37473996 ~ 37474778 (+)
G57227 NA non-coding downstream 385845 37477232 ~ 37548787 (+)
G57229 NA non-coding downstream 394984 37486371 ~ 37546259 (+)
G57066 NA other upstream 80644 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 1121932 35956104 ~ 35964510 (+)
G56504 NA other upstream 1627565 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1802171 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1813914 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 2017857 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2200684 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 2875703 39967090 ~ 40090271 (+)
G57664 NA other downstream 2953266 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 3583653 40675040 ~ 40680555 (+)

Expression


Co-expression Network