LOC103043413 (LOC108438559)


Basic Information

Item Value
gene id LOC103043413
gene name LOC108438559
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37254838 ~ 37278390 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670610.1
GGACCGCTGTCAACATTACAAATGTAAGGGGAGTGAAATCGAGAGGATATTGAGAGAGTCGAGGCAGAGAACATCTCGAGCTGGTATCTCTGTGGGTATCTCTGTCAGCCACACTAATGAGGGAGTGGACGGATCATGATATGGGCGTGGCGCCTGGAGGTTACCTGTCAGGTGTAGACGCCTACGGCATTTCAGAACCTCTGCAGTATTACGATGTTCTGGTGGACCCGCTGGGGTACCCGTATCAGGACCCGGACCTGCAGTGTTTTTCCTACGGGCAGCAGCACTACAGCCCCCCCAACGTCCAGCTCTCCATGTACACACCCCCCGGCTCTCAGCCCTGTAACCCCCCCTACCCCTATAGCCCGCAGTGCCCCGAGCCCCCCTGTGAAGCAGATATGGATCTCCACGCTCAGGTCCAAGGCGGTGTGGGCGTGACGCCCCTCATGAAGCGGCCCCGGCTGGGCCCCGGAGCCCGAGTGAAGGGTCAGGATGAGCTGTGTGTGGTATGTGGAGACAGAGCTTCAGGATATCACTACAACGCTCTGACCTGTGAAGGCTGCAAAGGTTTCTTCAGACGCAGTGTAACGAAGAAGGCCGTGTACCGCTGTAAGAGCGGCGGCGGCTGCGAGATGGACATGTACATGCGCCGCAAGTGCCAGGACTGCCGGCTGCGCAAATGCAGAGCTGTGGGGATGCTCGCCGAGTGTCTGCTGACGGAGGTGCAGTGTCAGTCGAAGCGATTGAGGAAGGGAGCCAAGCACCGAGGAGACTCGCTCTCTCGTCTGACTGCTGAGGACGAGGAGAACTCAGAGAGCAGGAACGTCTCGTCTACCAGCAGACTGCCTCCAACAACACGGGTTTCTTTGGGTCTTTCCAGAGAGCAGAAATGTGTTCTGAACAGAATCGTGGAAGCGTATCGGAGATACCGAGCTCACGACAGCCTACACTTCAGGGTTCCTCAGTGGTCAGGACTGGATGACGGTGGAGATCGTCTGGCTGATCTGACGCCTCTCCAGACAGAAAAGCTCCTGCAGTTCTCTAAGAGCGTACCAGgcTTTGAGCTCCTGGACGATGCTGATCAAAGCATTCTCCTGTCCTGCTCCTCCGTGGAGGTCATGTTCCTGCTCTCGGCTCAACAGTTTGCCGAGAATCCGTCCGCCTTCAGCGCAGCTCTGTATCCTGGAAGTTTATCGTCTGTATCTCCTCACTGCTGGATGAAAACTTCACAgtctaaaaacaacaacaacaacagcggCCATGAGGTCATACTAAACTCAGCAGGGTTGAGTGAGGAGCTCCTGGGACCAGTGCTAAATTTCTTCCACAGTATGGCCGCCATCGCTGTGACTGAGGCTGAATACGCTCTTCTCACTGCTACTGCCGTGCTCTGCTCAGACAGGCCCTCTCTTCGAGCGGTACGGTGTGTGGAGAACCTGCAGGAGTTTGTTCTGGATCTTCTCTCTAAGGTCTGCAGGAACGGCGATGGTGCCGCTGTGGGTCCGTGCCGCTTCGCCCGGCTGCTGGGCCGACTCACCGAGCTCAGGACGCTCCGCCACAACCACCTCACGCGCCTACCACAGCAACCCTGGGACCTGCAGCACTGAGAGACGCCCCTAGACCACAGAgaacagagagcagagagaggacTGGGTCATCTGGAAGGACTGATCTCACCTCCAGTGTTCATAAAACATAACAGAGTAGGATTACTGTGCTGTGTGCAGACTGTATACTgaaattaattcagtgttttttttttattattatagtgagaaataaaagaaagttaaggtttaaggtttagGATTAGCCGGTTTATCAGCAGGCTTCACTTTGTTTAGAATGACCAAGTTAAAACAGCTTTACTGAGCTGATCTACTGTTTAAAAGCTGATATAAGTAAGATTTaaggccctctctggtgagaatgggtaattgcactgagaatcatgcggaagaatcatttgaATCtgaaactgggcgggtgtggtGCCGCCTCCTTTCAGAgaggatgaatccgattccaggttatgttcagtcagagagagagagagaaagctcagtcagaaactttactctttca
>XM_022670611.1
GGACCGCTGTCAACATTACAAATGTAAGGGGAGTGAAATCGAGAGGATATTGAGAGAGTCGAGGCAGAGAACATCTCGAGCTGGTATCTCTGTGGGTATCTCTGTCAGCCACACTAATGAGGGAGTGGACGGATCATGATATGGGCGTGGCGCCTGGAGGTTACCTGTCAGGTGTAGACGCCTACGGCATTTCAGAACCTCTGCAGTATTACGATGTTCTGGTGGACCCGCTGGGGTACCCGTATCAGGACCCGGACCTGCAGTGTTTTTCCTACGGGCAGCAGCACTACAGCCCCCCCAACGTCCAGCTCTCCATGTACACACCCCCCGGCTCTCAGCCCTGTAACCCCCCCTACCCCTATAGCCCGCAGTGCCCCGAGCCCCCCTGTGAAGCAGATATGGATCTCCACGCTCAGGTCCAAGGCGGTGTGGGCGTGACGCCCCTCATGAAGCGGCCCCGGCTGGGCCCCGGAGCCCGAGTGAAGGGTCAGGATGAGCTGTGTGTGGTATGTGGAGACAGAGCTTCAGGATATCACTACAACGCTCTGACCTGTGAAGGCTGCAAAGGTTTCTTCAGACGCAGTGTAACGAAGAAGGCCGTGTACCGCTGTAAGAGCGGCGGCGGCTGCGAGATGGACATGTACATGCGCCGCAAGTGCCAGGACTGCCGGCTGCGCAAATGCAGAGCTGTGGGGATGCTCGCCGAGTGTCTGCTGACGGAGGTGCAGTGTCAGTCGAAGCGATTGAGGAAGGGAGCCAAGCACCGAGGAGACTCGCTCTCTCGTCTGACTGCTGAGGACGAGGAGAACTCAGAGAGCAGGAACGTCTCGTCTACCAGCAGACTGCCTCCAACAACACGGGTTTCTTTGGGTCTTTCCAGAGAGCAGAAATGTGTTCTGAACAGAATCGTGGAAGCGTATCGGAGATACCGAGCTCACGACAGCCTACACTTCAGGGTTCCTCAGTGGTCAGGACTGGATGACGGTGGAGATCGTCTGGCTGATCTGACGCCTCTCCAGACAGAAAAGCTCCTGCAGTTCTCTAAGAGCGTACCAGgcTTTGAGCTCCTGGACGATGCTGATCAAAGCATTCTCCTGTCCTGCTCCTCCGTGGAGGTCATGTTCCTGCTCTCGGCTCAACAGTTTGCCGAGAATCCGTCCGCCTTCAGCGCAGCTCTGTATCCTGGAAGTTTATCGTCTGTATCTCCTCACTGCTGGATGAAAACTTCACAgtctaaaaacaacaacaacaacagcggCCATGAGGTCATACTAAACTCAGGGTTGAGTGAGGAGCTCCTGGGACCAGTGCTAAATTTCTTCCACAGTATGGCCGCCATCGCTGTGACTGAGGCTGAATACGCTCTTCTCACTGCTACTGCCGTGCTCTGCTCAGACAGGCCCTCTCTTCGAGCGGTACGGTGTGTGGAGAACCTGCAGGAGTTTGTTCTGGATCTTCTCTCTAAGGTCTGCAGGAACGGCGATGGTGCCGCTGTGGGTCCGTGCCGCTTCGCCCGGCTGCTGGGCCGACTCACCGAGCTCAGGACGCTCCGCCACAACCACCTCACGCGCCTACCACAGCAACCCTGGGACCTGCAGCACTGAGAGACGCCCCTAGACCACAGAgaacagagagcagagagaggacTGGGTCATCTGGAAGGACTGATCTCACCTCCAGTGTTCATAAAACATAACAGAGTAGGATTACTGTGCTGTGTGCAGACTGTATACTgaaattaattcagtgttttttttttattattatagtgagaaataaaagaaagttaaggtttaaggtttagGATTAGCCGGTTTATCAGCAGGCTTCACTTTGTTTAGAATGACCAAGTTAAAACAGCTTTACTGAGCTGATCTACTGTTTAAAAGCTGATATAAGTAAGATTTaaggccctctctggtgagaatgggtaattgcactgagaatcatgcggaagaatcatttgaATCtgaaactgggcgggtgtggtGCCGCCTCCTTTCAGAgaggatgaatccgattccaggttatgttcagtcagagagagagagagaaagctcagtcagaaactttactctttca

Function

NR:

description
PREDICTED: bile acid receptor-like

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0050794 regulation of cellular process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670610.1 True 2085 mRNA 0.53 11 37254838 37278390
XM_022670611.1 False 2082 mRNA 0.53 11 37254838 37278390

Neighbor

gene id symbol gene type direction distance location
pqlc2 pqlc2 coding upstream 3868 37240674 ~ 37250970 (+)
trim33 trim33,LOC107734526,LOC107725313 coding upstream 17179 37191998 ~ 37237659 (+)
bcas2 bcas2,LOC107674303,LOC107734517,LOC107664982,LOC107725297 coding upstream 66122 37184419 ~ 37188716 (+)
LOC103044036 dennd2c,LOC108438557,LOC107566809,LOC107725285 coding upstream 72315 37151249 ~ 37182523 (+)
ampd1 ampd1,LOC107664993 coding upstream 104799 37126935 ~ 37150039 (+)
LOC103038870 LOC108438573,LOC107653415 coding downstream 514933 37793323 ~ 37800678 (+)
LOC103037590 NA coding downstream 819164 38097554 ~ 38137323 (+)
LOC111192680 plxna3,LOC108410726,LOC106572068 coding downstream 896581 38174971 ~ 38205601 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding downstream 1979135 39257525 ~ 39267633 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding downstream 1990832 39269222 ~ 39276715 (+)
G57088 NA non-coding upstream 21802 37230990 ~ 37233036 (+)
G56859 NA non-coding upstream 379491 36807703 ~ 36875347 (+)
G56863 NA non-coding upstream 421792 36825767 ~ 36833046 (+)
G56862 NA non-coding upstream 425348 36827530 ~ 36829490 (+)
G56853 NA non-coding upstream 481967 36770816 ~ 36772871 (+)
G57209 NA non-coding downstream 109699 37388089 ~ 37391366 (+)
G57212 NA non-coding downstream 195606 37473996 ~ 37474778 (+)
G57227 NA non-coding downstream 198842 37477232 ~ 37548787 (+)
G57229 NA non-coding downstream 207981 37486371 ~ 37546259 (+)
G57239 NA non-coding downstream 330126 37608516 ~ 37608801 (+)
G57066 NA other upstream 249040 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 1290328 35956104 ~ 35964510 (+)
G56504 NA other upstream 1795961 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1970567 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1982310 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 1830854 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2013681 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 2688700 39967090 ~ 40090271 (+)
G57664 NA other downstream 2766263 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 3396650 40675040 ~ 40680555 (+)

Expression


Co-expression Network