tbc1d22b (tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531)


Basic Information

Item Value
gene id tbc1d22b
gene name tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37547759 ~ 37599298 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670616.1
CGTCCCAAGATGGCGGCGTCCATCGCGAAGTATCATTCTCTTACTTTCTGCTGGTAAATATAGAGATTTAAAGCGCTGTGGAGCGCGGTAAACCGCGGTAAAGCGCTGCGAGAGGCTGTAACAGGCCGCGGGGGAGCGGGGGGAGCCCGGCCGCGGTGTTTATCCCGCCGGGGGCTGATGTATTTCTCCGGCTGAGGGTTCAGAGCTCAGCCCGGGTCTCCGGCCATGGCCACCGAAAACAAACTCCAGTTCTGGAGGAGGAACGCTAAGGGTCCCGGCAGTTTGCAGCCGATCTATGGAGCGCAGTACCCTCCGCTGGACCCGCGGGTACTCCGCTCGTTTCTAAAAGACACTCCAAAGACGAACGCTGTGAACATCAAATCGAAGAAGCCGTCCACGTTCCACGAGTTTGCTCGCAGCACTAACGATGCGTGGGACATCGACGATGAGGAAGACGAAGATTTCTTCCCTTCATCACATCCCTCTTCTCTTCCCACACAATCACACTCCAAACCCCAGACGCCTCGCCTCAAAGTGTCCAAACACTCCCCTCACACTGAGCCCCAGTCTCCGCCCCAGTCCCAGCCTCAGCCAATCGACTGGCAGGAACCAATCAGCACAGAGCCCTGCCAAGATCAGCTGAGGATTGACGATGAACCCACCAATGGCAGAGTGGTAAAGTCCAATAGTGATGCTCACCTGAACACCAGTACAGTGCGCAACACTCTTCAGAAGCAGCAGTCACTTCCTGTACGACCCATCATCCCCCTGGTCGCCCGCATTTCGGACCAGAATGCATCAGGAGCTCCGCCCATGACCGTGCGGGAGAAGACGCGGCTGGATAAGTTCAGGCAGCTGCTGGCCAGTCCTAACACAGACCTGGATGAATTGCGGAAGCACAGCTGGTCAGGAATCCCTCGAGAAGTCCGGCCAATCACTTGGAGGCTTCTTTCAGGTTACCTCCCCGCTAATATGGAGCGCAGGGTGCTGGTTCTCCAAAGGAAGCGAGAGGAGTATTTTGGCTTCATTGAACAGTATTACCACTCCAGAACAGATGAGCACCACAGAGACACCTACAGACAGATTCATATTGATATCCCCAGAACAAACCCACTGATCCCATTGTTCCAGCAGCCGCTGGTCCAAGAGGTGTTTGAAAGGATTCTTTTTATCTGGGCGATTCGGCATCCGGCCAGCGGTTACGTTCAGGGCATCAACGACCTCGTCACGCCGTTCTTCGTCGTCTTCCTCTCTGAGTTTGTGGAGGAGGACGTGGAGAACTTTGAGATGGCTGCATTGCCGTTGGACACGCAGCGGAACATCGAGGCGGACAGCTTCTGGTGTATGAGCAAGCTGCTGGACGgaatacagGATAACTACACGTTTGCTCAGCCTGGTATTCAGAAGAAAGTGAAGGCTCTGGAGGAACTGATCAGCAGGATCGATGAGGACATCCATCTTCACTTTCAGAAGTGTGAGGTGGAGTACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGCTTCCACTGCGCTGCACCATCCGTCTGTGGGACACCtaccaggcCGAGTCTGAGGGGTTCTCTCATTTCCACTTATACGTGTGTGCGgcgttcctaataaagtggcgcAAAGAGATTCTCTCCATGTCTGATTTCCAGggGCTTCTCATGCTTCTGCAGAACCTACCCACAATACACTGGGGCAACGAGGAGGTGGGTTTACTCCTGGCTGAAGCCTACAGACTCAAGTACATGTTTGCGGACGCTCCCAGACACTACAAAAGATAAGGACTTCCTCCATCACTGATGAACTCAACAGTGACCCACAGTGACCTACAGTGACCCTCGTGCTCGCCCTCAAGTCTGGAGCCATTTCTTTAATCTGCTGTTACTTTAATCTGACTGAGGGCTGAACCTCAGGAGGGTCTTCAGGCTGCAGGACTGGAAGGAAAAGAATGATTCTTCAACGAGATCCTCAACAGGAAGCAGCGTTTCTAGAGAACGAATATCGAACTTCGGCGAAAGTCTTCAGTAGATCATTTTTTCAGCGGAGGAAAAACCACTGAGAAACTCTTCCAAGGATTGATTTTTATGTGAAAATTTTATCGTAACTAATCAAAAGCGATAAAGGAGAAAGAGGCGTGGCCAATTTTCAGACACTTTATGATCTttatgatgctttttttttttttaaatagtagtaatttttttaagaccATTTGAATTGTAACCGTTGAATGTTATCCAATGAGTTTTACATACATAGACGACGTTTCCATGTGCGCTGTTGACCGAACCGCCTGTTCCTGCTGAAAAAGGAAAGCTGATGATTGGTCAACATGGCTGTTCCTGCAGTTCTGCGGTACTAAAGCAGCTATTCAGGAACATTTCTGATGATGAGATGCAGCGGTACAAGTCATTAGCTCATAATGAAGAGTCTCTGCGCTTATAAAAGACTGTGAATTGTGAATTTAAACAATCAAGGACAATATCCTGTCCTACTTTCTAAAGGTGGCCTAGCTTTGTATGAACCCCAATATTATGTTGCACAAATGTTTAAGGCTAGAGGTGTACTTACTGTTGTTTGGCCGTGCGCTCATATAAAAAAGTGAATCTTAGAATTTTTTATACttctacatacagctctggggaaaaaaaagtaaaagatcacttaaaaatgtgttttttccttgattttggcaaatta
>XM_022670617.1
CGTCCCAAGATGGCGGCGTCCATCGCGAAGTATCATTCTCTTACTTTCTGCTGGTAAATATAGAGATTTAAAGCGCTGTGGAGCGCGGTAAACCGCGGTAAAGCGCTGCGAGAGGCTGTAACAGGCCGCGGGGGAGCGGGGGGAGCCCGGCCGCGGTGTTTATCCCGCCGGGGGCTGATGTATTTCTCCGGCTGAGGGTTCAGAGCTCAGCCCGGGTCTCCGGCCATGGCCACCGAAAACAAACTCCAGTTCTGGAGGAGGAACGCTAAGGGTCCCGGCAGGTTTCTAAAAGACACTCCAAAGACGAACGCTGTGAACATCAAATCGAAGAAGCCGTCCACGTTCCACGAGTTTGCTCGCAGCACTAACGATGCGTGGGACATCGACGATGAGGAAGACGAAGATTTCTTCCCTTCATCACATCCCTCTTCTCTTCCCACACAATCACACTCCAAACCCCAGACGCCTCGCCTCAAAGTGTCCAAACACTCCCCTCACACTGAGCCCCAGTCTCCGCCCCAGTCCCAGCCTCAGCCAATCGACTGGCAGGAACCAATCAGCACAGAGCCCTGCCAAGATCAGCTGAGGATTGACGATGAACCCACCAATGGCAGAGTGGTAAAGTCCAATAGTGATGCTCACCTGAACACCAGTACAGTGCGCAACACTCTTCAGAAGCAGCAGTCACTTCCTGTACGACCCATCATCCCCCTGGTCGCCCGCATTTCGGACCAGAATGCATCAGGAGCTCCGCCCATGACCGTGCGGGAGAAGACGCGGCTGGATAAGTTCAGGCAGCTGCTGGCCAGTCCTAACACAGACCTGGATGAATTGCGGAAGCACAGCTGGTCAGGAATCCCTCGAGAAGTCCGGCCAATCACTTGGAGGCTTCTTTCAGGTTACCTCCCCGCTAATATGGAGCGCAGGGTGCTGGTTCTCCAAAGGAAGCGAGAGGAGTATTTTGGCTTCATTGAACAGTATTACCACTCCAGAACAGATGAGCACCACAGAGACACCTACAGACAGATTCATATTGATATCCCCAGAACAAACCCACTGATCCCATTGTTCCAGCAGCCGCTGGTCCAAGAGGTGTTTGAAAGGATTCTTTTTATCTGGGCGATTCGGCATCCGGCCAGCGGTTACGTTCAGGGCATCAACGACCTCGTCACGCCGTTCTTCGTCGTCTTCCTCTCTGAGTTTGTGGAGGAGGACGTGGAGAACTTTGAGATGGCTGCATTGCCGTTGGACACGCAGCGGAACATCGAGGCGGACAGCTTCTGGTGTATGAGCAAGCTGCTGGACGgaatacagGATAACTACACGTTTGCTCAGCCTGGTATTCAGAAGAAAGTGAAGGCTCTGGAGGAACTGATCAGCAGGATCGATGAGGACATCCATCTTCACTTTCAGAAGTGTGAGGTGGAGTACCTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTGATGAGGGAGCTTCCACTGCGCTGCACCATCCGTCTGTGGGACACCtaccaggcCGAGTCTGAGGGGTTCTCTCATTTCCACTTATACGTGTGTGCGgcgttcctaataaagtggcgcAAAGAGATTCTCTCCATGTCTGATTTCCAGggGCTTCTCATGCTTCTGCAGAACCTACCCACAATACACTGGGGCAACGAGGAGGTGGGTTTACTCCTGGCTGAAGCCTACAGACTCAAGTACATGTTTGCGGACGCTCCCAGACACTACAAAAGATAAGGACTTCCTCCATCACTGATGAACTCAACAGTGACCCACAGTGACCTACAGTGACCCTCGTGCTCGCCCTCAAGTCTGGAGCCATTTCTTTAATCTGCTGTTACTTTAATCTGACTGAGGGCTGAACCTCAGGAGGGTCTTCAGGCTGCAGGACTGGAAGGAAAAGAATGATTCTTCAACGAGATCCTCAACAGGAAGCAGCGTTTCTAGAGAACGAATATCGAACTTCGGCGAAAGTCTTCAGTAGATCATTTTTTCAGCGGAGGAAAAACCACTGAGAAACTCTTCCAAGGATTGATTTTTATGTGAAAATTTTATCGTAACTAATCAAAAGCGATAAAGGAGAAAGAGGCGTGGCCAATTTTCAGACACTTTATGATCTttatgatgctttttttttttttaaatagtagtaatttttttaagaccATTTGAATTGTAACCGTTGAATGTTATCCAATGAGTTTTACATACATAGACGACGTTTCCATGTGCGCTGTTGACCGAACCGCCTGTTCCTGCTGAAAAAGGAAAGCTGATGATTGGTCAACATGGCTGTTCCTGCAGTTCTGCGGTACTAAAGCAGCTATTCAGGAACATTTCTGATGATGAGATGCAGCGGTACAAGTCATTAGCTCATAATGAAGAGTCTCTGCGCTTATAAAAGACTGTGAATTGTGAATTTAAACAATCAAGGACAATATCCTGTCCTACTTTCTAAAGGTGGCCTAGCTTTGTATGAACCCCAATATTATGTTGCACAAATGTTTAAGGCTAGAGGTGTACTTACTGTTGTTTGGCCGTGCGCTCATATAAAAAAGTGAATCTTAGAATTTTTTATACttctacatacagctctggggaaaaaaaagtaaaagatcacttaaaaatgtgttttttccttgattttggcaaatta

Function

symbol description
tbc1d22b Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D22B (TBC1 domain family member 22B).

NR:

description
PREDICTED: TBC1 domain family member 22B

GO: NA

KEGG:

id description
K20360 TBC1D22, GYP1; TBC1 domain family member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670616.1 True 2719 mRNA 0.49 13 37547759 37599298
XM_022670617.1 False 2662 mRNA 0.49 12 37547759 37599298

Neighbor

gene id symbol gene type direction distance location
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding downstream 71747 37390442 ~ 37476012 (-)
slc2a6 slc2a6,LOC107599026 coding downstream 486061 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 499143 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 729548 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 769449 36755166 ~ 36778310 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 31759 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 209250 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 254482 37853780 ~ 37958375 (-)
gripap1 gripap1,LOC107743091,LOC107653413,LOC107734529 coding upstream 409256 38008554 ~ 38086312 (-)
LOC103047168 NA coding upstream 488289 38087587 ~ 38095443 (-)
G57225 NA non-coding downstream 101716 37445734 ~ 37446043 (-)
G57218 NA non-coding downstream 158340 37381076 ~ 37389419 (-)
G57201 NA non-coding downstream 238645 37308669 ~ 37309114 (-)
G57199 NA non-coding downstream 243515 37303870 ~ 37304244 (-)
G57178 NA non-coding downstream 293960 37249860 ~ 37253799 (-)
G57272 NA non-coding upstream 44902 37644200 ~ 37675261 (-)
G57351 NA non-coding upstream 246761 37846059 ~ 37846284 (-)
G57364 NA non-coding upstream 461926 38061224 ~ 38126192 (-)
G57366 NA non-coding upstream 498298 38097596 ~ 38120711 (-)
G57368 NA non-coding upstream 532183 38131481 ~ 38136001 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 221023 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 248152 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 755315 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 801125 36680166 ~ 36746634 (-)
G57014 NA other downstream 1144461 36402850 ~ 36403298 (-)
LOC111192682 NA other upstream 661819 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1922246 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2518491 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2566102 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 3149443 40748741 ~ 40756014 (-)

Expression


Co-expression Network