LOC111192681 (si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110)


Basic Information

Item Value
gene id LOC111192681
gene name si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37390442 ~ 37476012 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670620.1
agagagagagaagcagcagcagtcgTGCTTTTTGCTGCTATTCTCACGGTAGTGCTGTAACTGGCAGGAGGAGCTGTCCGCGCGCCGTGGTGCTGAAACCGAAATCCAACGCGTTTTTAAAAGCAAGGGTGAACAAACACCTCTTCATCATCAATATGAGACGAACAGAACGCCACTTATTGAAGGAAACGGAATAAAAACAAGCTCCTTTTTTATCAGTTTCATCCCAAGCTTTCTTTCCGTGCATTCCGAAGCATTTTGGTTGAATACTGTAGTGGATAACCCTGCAGGACCACAGTGCAAGGTGGTGTTTTTTCCAGCTTTACCAGCTTTTCTTTTTGGTATCATTCCTGATGGTGCCATTCCATACAACTGTTCCATATTCAGTACTCAgctctggtggtggtggtggtcttCTTATTTGTCCTTTTCTTTTGCATCATTTTCATTGGGTTCAATGGAAAAATGACTAGGGGTTgagaagttaaaaaataaaataaaaaatgttaaataaggaGGATAACATCACTACAACTACTGCGTGACCCAGATAACGCCACGTAAGGTTACGAGCACACGTTTAACCCTTCTCTGCCACCTTGTGCCCCCTGGAAATCCTTGGTAACCCCTTGGAAACCACTGGAAACCCTTGGAAACCACTGGAAACCCTTGGAAACCACTGGAAACCCTTGGAAACCCCTGGAAACCTACCCATGGAAGAAGCGGCAGCTGCAGCATCCGCAGCATCAGCAGCCTCAGCAGCCTCAGCATCCCGCATGCGGGGAGCTCGTTAGTGCGCGGGACCGGCCGCAGGATGCAGTCGGGGGACGCGGGCAGTCTGCGCCGGAAGTGGCGCCTCGCTCTGTTGCCTGCTCCTGCTCTGGCTCATCTACACTCACCTGCTCAGAGAAGGTCAGCTGGCGGTTGGCACGTGTGAGATTGTGATGTTGAACAGAGACAGCAGTCAGCCTAAGCGCACCATCGCCAGGCAGACCGCCCGCTGCGCCTGCCGGAGAGGGCAGATCGCGGGCACCACGCGGGCGCGGCCGGCATGTGTGGACGCAAGGATAGTGAAGAGCAGGCAGTGGTGTGAGATGACCCCGTGTTCAGAGGGAGAGATCTGTGGGCTGCTGTTCAACCACTCCGGCTGGACCTGCACTAAAGGAGGAGGACGGATAAAAACTGTCACGCCATTGCCAAAGGAGCCATCTTAAAGGACATCAGCTGAGAGGAGGTCTATTGACATTCATGGAAACATTGCAGACCAGAAGTCATTCATCAAACCAACACATCCTCTCATCCTGGAGCTAAAAcaacaactcaactcaactcaactccgCACCAATCAGAATTACAACCAATTGCACCAGTTTCAAATTCAGCCCAACCTCCAACTCCATCCCCAACCTCAAACTCCAAACCCCAAACCAAACCAGGAACCAGCAGCACCTTCAGGCGATTGGTCATCCTCAGCGAACAGTCGGTGGTCATCGTTGAGTGAACTGGAATGAGGTCGTGATCCAGAACATCTCCACAATCCAGAACCTCCACTTGACTTGAGACGCTCTGGAGATTCGCTTTTGGACTCCATTCGCCTGGATTGCAATTGCAGGACTCGAaacacaagaagaagaagaaaaaaagctcATCCGAAAAGACTTGGAGCTTAGAGCGGATGGAAGCTTCATATGTTGATGCTCTAAAGACGCCAAACAAGCTGTTGAAACCCAACAGACGCTGCTGGATTATCCCAGCAGAACATGATCGTGTTCGGGATTTTTACAGAGCTGATGGCTCCAAACAACCTGGACAACGACATAAAccactaataaaaaacacaactcaaaaacactactataaaaaaaacgatGATGCCTTGTGATTCATTCTCTCTACAGCATCAGAGGACACAGGACACAGGACTGAGGACAGATCTGGATGTGAGCTTTGGAGCTTTTGGTACAATTTGCATTGATTGCATTGATTCAAACTGatgaataaagacattttagacattttaaaccATGAAGGAAAAAATgactacaaaaaaaactttgattttgGACTTTTGGCTCGGACTGACTTCATCTTCATTGAGATTTTTGAGTGTACCTCGATTTCcatttgaataaaacaacaaaaaaaagagataatacAGTA

Function

NR:

description
PREDICTED: protein FAM19A5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670620.1 True 2160 mRNA 0.48 6 37390442 37476012

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107599026 coding downstream 328744 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 341826 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 572231 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 612132 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 748879 36605407 ~ 36641563 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 71747 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 155045 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 332536 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 377768 37853780 ~ 37958375 (-)
gripap1 gripap1,LOC107743091,LOC107653413,LOC107734529 coding upstream 532542 38008554 ~ 38086312 (-)
G57218 NA non-coding downstream 1023 37381076 ~ 37389419 (-)
G57201 NA non-coding downstream 81328 37308669 ~ 37309114 (-)
G57199 NA non-coding downstream 86198 37303870 ~ 37304244 (-)
G57178 NA non-coding downstream 136643 37249860 ~ 37253799 (-)
G57176 pqlc2 non-coding downstream 145061 37240655 ~ 37245381 (-)
G57272 NA non-coding upstream 168188 37644200 ~ 37675261 (-)
G57351 NA non-coding upstream 370047 37846059 ~ 37846284 (-)
G57364 NA non-coding upstream 585212 38061224 ~ 38126192 (-)
G57366 NA non-coding upstream 621584 38097596 ~ 38120711 (-)
G57368 NA non-coding upstream 655469 38131481 ~ 38136001 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 63706 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 90835 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 597998 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 643808 36680166 ~ 36746634 (-)
G57014 NA other downstream 987144 36402850 ~ 36403298 (-)
LOC111192682 NA other upstream 785105 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2045532 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2641777 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2689388 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 3272729 40748741 ~ 40756014 (-)

Expression


Co-expression Network