praf2 (praf2,LOC107691574,LOC107756831,LOC107565129,LOC107702816)


Basic Information

Item Value
gene id praf2
gene name praf2,LOC107691574,LOC107756831,LOC107565129,LOC107702816
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39806607 ~ 39815021 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670638.1
GCACGCTGGGTAATGTAGTTCTACAGAACTGTGGAAAATGGTGGACGTTCAGCCTCCGCCTCTGCGAACCCTGGATGATTTTTTGTTGAGCTCGGCTCGATTCTCCGCGCCTGATATTCGTAATTTAGAAAGATGTAACAACcggataattaataatttactgtattaCCAGACCAACTACTTCATCTCCGCGCTGGCGGTGCTGCTGCTGGTCGGGTATTTCCGGCCATTCCAGCTCTTCCTCGGGGCGATCGTGGTGGTTCTGGTGTTTTCGGGCTTCGTTTGGGCCGCAGAGAACAAGGCCGCAGTCAGGCGCTTTCGGAGGAACCACCCCTCTGTTTGCCTAGTGGCTATCTTGGGCTCCAGCTATCTTCTGCTGTCGGTCCTGGGAGATGTGGCCGTGTTCCTCTTTGGCATCACCTTCCCCATTTTATtgATTCTGATCCATGCCTCTACAAGGTTACGCAACTTAAAGAACAAACTGGAGAACAGGCTGGAGAGCATAGGGCTGAAGAGGACACCCATGGGAATGCTACTGGAGGCACTGGGTCAGGAACAGGAAGCAGGGTCATAGTCTGAGTACCTGTCCCACACCGGTCTTCTCCTAGGGTCAGTTACGATCAACACAATTAGCGGTATGTTTTACAACAGTGCCAATAAGGTCTAGGGGAGAACATTGTTTGGGTGGAATATGTTTTGAAGGAAGGATTGAACACACTTATATTATTACCAATTATAATTCTAAAGCACATCCATCCAATGTGTTTTGTGAAGGACGGGATGTGCAGGCAAATCACATGTTATCAATTTAACACCGACAGTGTATTCTCAAACTGTGTTGTTTTTACTGTAGGTGTTAATTGATCTCATGTGATTTTACTGCAATCAACCAAGATAGGAGAAGCATTAACTGTTTTGCATTCCATGTTTATGTGCTTGTATCTTGATTGATTCTGTACTTTTATAAtgattgttttgttgttgttcctGTTTCACACAAACAGTTTATGCCTATACTAGCCCACAATGCCTCCACAATACATTCTCtagtttaatgtgattttattcattatttgcaCTTAATTGTGCATCCATTATTGTGACATAATGCAAATCCTATATTATAAAGCagcgttcaaaagtttggaatcagTAATTCCAGAAGGAAAATCCACCTGCTtgcaaattaatatataaagcCATGTAAtattatactgtttatttttattttctgagtTTCAAATAGGAATTTTCGACTGGAACAGCCCCACAAGTTTGAATTTGTATATTTGGAAAGCCAGGAGAAACTCGCTAACCCTGAGTTTAAAATCCAAGATGGGTGCATCGCAgatcaacagtagtaaaagcagtatTTGCAGTagttttttcagtttattaacacttctatctgtatctgtttaatgttacagtcatacatacagtacagccATGTCCAACTTCTGCACCACTTCAAAATAAAGCTCCTTTATGAAGAGTTTAGAAATAGTCTATGAGGgagttaattaatggttaacAATTAGGATGTAAATACTTTCTAAaccataaataaatagtaacaaCGCATAAAACGtgcattattgatttatttttccatCAGCCAGCATTAACATAGcattaacataataaaatattaaataaagtcaatttagttatgttattttatgcTAATGtacaccacattatgattacTGGATAAATGATTAATCTGGGTAGTTAAAGATAAGATGGAACAGACAAAGGaaggtttaacagtatatatGAATGTGAAATCACAATTTGGCAAAAATACAGGCCACTGTTGTATTTCTATGTATGTGATGTAATTGCTtgttaatggtttaaaaatatttacaacctaattaatgaCATAacataaactcctttataaacgatttttaaacactttataaaggagccttattttaaagtggtccaACTTCTATAAGTGGGCAAGTTTCTATGGTGTTTaagatgcacaaaatactgcaTAATGAGTCATTATTAACTAGAACATCTAAcatacatttattgtttttaattttcttttttttattattttctacattgtagattaatattgaaggCATCAAAAATATGAAGGAATGCAGATGCAATTatgaattaaacaaaaagtgttaaacaagccaaaatatgttttatactttagtagAACCTTTTGCTTTGCTGCCGACTTTGCCCACTCTTGGGATTATTCTCTCAGATTTTACTTCAGGAGGTAGAACCTGGAAGGAAGTTCTATGTGTGCTGAGCTCCTATTCACTGCTTTTCGTTTCTTTTTGACAGGAAATTAGCAAACCGTGTCATTTAAACAGGAGTGTCCCATTTTTAATATACACTGTCTGGCC

Function

symbol description
praf2 Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human PRAF2 (PRA1 domain family member 2).

NR:

description
PREDICTED: PRA1 family protein 3

GO: NA

KEGG:

id description
K20393 ARL6IP5, PRAF3; PRA1 family protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670638.1 True 2387 mRNA 0.37 3 39806607 39815021

Neighbor

gene id symbol gene type direction distance location
LOC103034295 cacna1f,LOC108426741,LOC107756819 coding downstream 3955 39757462 ~ 39802652 (-)
LOC103028093 syp,sypb,LOC108426646,LOC107678440,LOC107553146 coding downstream 51004 39729088 ~ 39755603 (-)
plp2 LOC108426740 coding downstream 88404 39686731 ~ 39718203 (-)
prickle3 LOC108426739 coding downstream 129132 39611770 ~ 39677475 (-)
LOC103028930 NA coding downstream 211332 39588017 ~ 39595275 (-)
timm17b timm17b,LOC107722912 coding upstream 839 39815860 ~ 39821454 (-)
gpkow NA coding upstream 15633 39830654 ~ 39841946 (-)
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding upstream 311193 40126214 ~ 40140995 (-)
LOC111192685 LOC108442090 coding upstream 335626 40150647 ~ 40160654 (-)
LOC103039838 LOC108442080 coding upstream 378472 40193493 ~ 40225510 (-)
G57623 NA non-coding downstream 84995 39719431 ~ 39721612 (-)
G57560 frmd3 non-coding downstream 438898 39363085 ~ 39367709 (-)
G57447 NA non-coding downstream 581015 39224941 ~ 39225592 (-)
G57450 NA non-coding downstream 653256 39151918 ~ 39153351 (-)
G57452 agtpbp1,LOC106580090 non-coding downstream 655786 39143116 ~ 39150821 (-)
G57671 pqbp1 non-coding upstream 7660 39822681 ~ 39829352 (-)
LOC111192684 NA non-coding upstream 97099 39912120 ~ 39967320 (-)
G57704 LOC108442091 non-coding upstream 172463 39987484 ~ 40090251 (-)
G57729 kdm5c non-coding upstream 306464 40121485 ~ 40124946 (-)
G57748 NA non-coding upstream 346506 40161527 ~ 40162104 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 243686 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 1501141 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2479871 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2507000 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 3014163 36785308 ~ 36792444 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 302768 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 350379 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 933720 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1581065 41396086 ~ 41398478 (-)
G58435 aaas other upstream 3287849 43102870 ~ 43107623 (-)

Expression


Co-expression Network