LOC111192685 (LOC108442090)


Basic Information

Item Value
gene id LOC111192685
gene name LOC108442090
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40150647 ~ 40160654 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670651.1
taactccAGGACCCCTTttagaaactaatcccgtccgaaAAGGGGCAGTTAAGAAAATGCTATGAAATGGGCTGAACgtaaaaaaacaaccaacagagcattGCGAtttgatggtgtttgttagTGTAACCATTGTCAATTTTTAGACTAAATGGACTTCACAGAGATATTTTACTCCAAAATAcgttggagcatttctattgattcattcataattaattttaacCCTATGTATTAAGTACACCTGCCAGATTTGCATTATGtcaaacagtaaaaacaatCCCAAAACAGGagatatatttaatttgtttgatGCAATACATTTTAGAAGCAGATAAGAACTATATGAGCAGATTTGCTGTGTGCTGTCACTCTTGTGACACAATTTTATCTGAGATAACAAATAAATCATGTGCGGTTCTGGCAGGCATTTGACCAGCAGATGAATTATAGATTTCCACTTAGGTGAAACTCAATCTCTCCactcctctcgctctctctctctctctctctctctctttgctttcATTGCTTTCATTGACGACCCCAAAACATTcactcatgcacacactcacacacacacacacacatgcacacctgACCTCCCGCAGAGTCCCAGCATGCAGCAGGAGCTGTGGCTGTGGGCCCAGTCTCAGCTGCTTGCTTCGCTGAACGCAGTGTGTGCCATGAGAGCGGCCGCCTCACACCCGCTGCCCACGCCCCCGTCCCAGCTCGAGCTGAAGCGTGCCCTGTCCGGCCCAGACGGGCCTGGCCAGACCCACAACGCACCAAACTCACCAAGACCAGGACACCTCAGGACCCGCACGGCCAACAACACGTTCAACAACAGCCCCGTGTTCCCACAGAACAGAGAAAATGCTGATAAGAACAGTGCTGGTGAAAGCCCCTGGAACCTGCACAACCCTGTGAAGGCCTCAAGGAGCCATCAGGAACTCCACAGAGAGCTCCTACTAGCCCACAAGAAGGAGGGCAGAGGGCTGGTAGTGTGCTGCAAGCCGGAGCTCCAGATGGTTCTGGAGAGGCGGAAGAGGGAGCAGACACAgaaggaggagggagagagggacagGAGCCCTCTGGAACAGGTCCTACTTAAAAGACAGCAGAAGCACGAGGAGGTGACGAAGGAGAAGGAGCAGGAAGAGAAGGTTCGTCAGGAGATTCAGCTTCTGGAGTTCGTCAGAGTGAGACAGAACTTGAGAAAAGTTCATACAGCTCTACACAAGAACATCAGCTCCTGAAGCTCTTCCACGGGAGAAGCTGGCTGTGACTGCATGAACAGAACACTGGAAACATGCAGAAGCCTCTTCAACCTTTTCTACAGAACCTTCAGTCACACTGACTGAGGAGGGGGTCATCGTTCTTTAATGCTGTGGTCACCCTGCTGGAAACCTTAGTGgctttcacactgttttctgCCTCTGTGTTTTTAGTTAATCAGAATCAGTTTAGAACATTCTACCCCTTCATTACTTTGTgttagaaataataaaacaagttcatataaaaGTGA
>XM_022670652.1
tgacttcacatgtggagacatgtgctagtcttcatccaccttgtgttgtggcatcactagtgattggggGTTATAAAGCTGACTAGCAACTGATTAGGTGGGACAATTGACCAGATAaatggagaaaatgaaaaagaaaaaaacagcttgtgATGTCAATGTTAACTGGGGGTGGGCAGGGAATTTATAATAGTTGTATACAAACacttaaatgatcatttaacTCAACCAGGCAGCACTGAGGACATGTTAACATGATGGTAAACATTCTTActtttatcttaatttattttttacagtgtttctaTTATATTTAGGCAAATGTGCtgtgcacacaaaatacacatgaATTCAGAACAGCTTTTCTTGTATTCTGTCCAGTAGTCTGCTGGCCTTTGTGGAGGCACTGTACAAAAACATGCTTTACACTCCCCCATCTGGTAGAAAAAGGGAAAGGCACTTCAGATGGGGGTCCAGATAAATGCTCCCTTTCTCAGGTGTCTGCTGTGCTGTGGTGTAAATGTGATATCCGTTACTCACCACAGCTCAGAGGACAACTCGCTCATGGAGGGCTGACACACTTTCGAGTCCCAGCATGCAGCAGGAGCTGTGGCTGTGGGCCCAGTCTCAGCTGCTTGCTTCGCTGAACGCAGTGTGTGCCATGAGAGCGGCCGCCTCACACCCGCTGCCCACGCCCCCGTCCCAGCTCGAGCTGAAGCGTGCCCTGTCCGGCCCAGACGGGCCTGGCCAGACCCACAACGCACCAAACTCACCAAGACCAGGACACCTCAGGACCCGCACGGCCAACAACACGTTCAACAACAGCCCCGTGTTCCCACAGAACAGAGAAAATGCTGATAAGAACAGTGCTGGTGAAAGCCCCTGGAACCTGCACAACCCTGTGAAGGCCTCAAGGAGCCATCAGGAACTCCACAGAGAGCTCCTACTAGCCCACAAGAAGGAGGGCAGAGGGCTGGTAGTGTGCTGCAAGCCGGAGCTCCAGATGGTTCTGGAGAGGCGGAAGAGGGAGCAGACACAgaaggaggagggagagagggacagGAGCCCTCTGGAACAGGTCCTACTTAAAAGACAGCAGAAGCACGAGGAGGTGACGAAGGAGAAGGAGCAGGAAGAGAAGGTTCGTCAGGAGATTCAGCTTCTGGAGTTCGTCAGAGTGAGACAGAACTTGAGAAAAGTTCATACAGCTCTACACAAGAACATCAGCTCCTGAAGCTCTTCCACGGGAGAAGCTGGCTGTGACTGCATGAACAGAACACTGGAAACATGCAGAAGCCTCTTCAACCTTTTCTACAGAACCTTCAGTCACACTGACTGAGGAGGGGGTCATCGTTCTTTAATGCTGTGGTCACCCTGCTGGAAACCTTAGTGgctttcacactgttttctgCCTCTGTGTTTTTAGTTAATCAGAATCAGTTTAGAACATTCTACCCCTTCATTACTTTGTgttagaaataataaaacaagttcatataaaaGTGA
>XM_022670653.1
ataactccAGGACCCCTTttagaaactaatcccgtccgaaAAGGGGCAGTTAAGAAAATGCTATGAAATGGGCTGAACgtaaaaaaacaaccaacagagcattGCGAtttgatggtgtttgttagTGTAACCATTGTCAATTTTTAGACTAAATGGACTTCACAGAGATATTTTACTCCAAAATAcgttggagcatttctattgattcattcataattaattttaacCCTATGTATTAAGTACACCTGCCAGATTTGCATTATGtcaaacagtaaaaacaatCCCAAAACAGGagatatatttaatttgtttgatGCAATACATTTTAGAAGCAGATAAGAACTATATGAGCAGATTTGCTGTGTGCTGTCACTCTTGTGACACAATTTTATCTGAGATAACAAATAAATCATGTGCGGTTCTGGCAGGCATTTGACCAGCAGATGAATTATAGATTTCCACTTAGGTGAAACTCAATCTCTCCactcctctcgctctctctctctctctctctctctctttgctttcATTGCTTTCATTGACGACCCCAAAACATTcactcatgcacacactcacacacacacacacacatgcacacctgACCTCCCGCAGAGTCCCAGCATGCAGCAGGAGCTGTGGCTGTGGGCCCAGTCTCAGCTGCTTGCTTCGCTGAACGCAGTGTGTGCCATGAGAGCGGCCGCCTCACACCCGCTGCCCACGCCCCCGTCCCAGCTCGAGCTGAAGCGTGCCCTGTCCGGCCCAGACGGGCCTGGCCAGACCCACAACGCACCAAACTCACCAAGACCAGGACACCTCAGGACCCGCACGGCCAACAACACGTTCAACAACAGCCCCGTGTTCCCACAGAACAGAGAAAATGCTGATAAGAACAGTGCTGGTGAAAGCCCCTGGAACCTGCACAACCCTGTGAAGGCCTCAAGGAGCCATCAGGAACTCCACAGAGAGCTCCTACTAGCCCACAAGAAGGAGGGCAGAGGGCTGGTAGTGTGCTGCAAGCCGGAGCTCCAGATGGTTCTGGAGAGGCGGAAGAGGGAGCAGACACAgaaggaggagggagagagggacagGAGCCCTCTGGAACAGGTCCTACTTAAAAGACAGCAGAAGCACGAGGAGGTGACGGAGAAGGAGCAGGAAGAGAAGGTTCGTCAGGAGATTCAGCTTCTGGAGTTCGTCAGAGTGAGACAGAACTTGAGAAAAGTTCATACAGCTCTACACAAGAACATCAGCTCCTGAAGCTCTTCCACGGGAGAAGCTGGCTGTGACTGCATGAACAGAACACTGGAAACATGCAGAAGCCTCTTCAACCTTTTCTACAGAACCTTCAGTCACACTGACTGAGGAGGGGGTCATCGTTCTTTAATGCTGTGGTCACCCTGCTGGAAACCTTAGTGgctttcacactgttttctgCCTCTGTGTTTTTAGTTAATCAGAATCAGTTTAGAACATTCTACCCCTTCATTACTTTGTgttagaaataataaaacaagttcatataaaaGTGA
>XM_022670654.1
tgacttcacatgtggagacatgtgctagtcttcatccaccttgtgttgtggcatcactagtgattggggGTTATAAAGCTGACTAGCAACTGATTAGGTGGGACAATTGACCAGATAaatggagaaaatgaaaaagaaaaaaacagcttgtgATGTCAATGTTAACTGGGGGTGGGCAGGGAATTTATAATAGTTGTATACAAACacttaaatgatcatttaacTCAACCAGGCAGCACTGAGGACATGTTAACATGATGGTAAACATTCTTActtttatcttaatttattttttacagtgtttctaTTATATTTAGGCAAATGTGCtgtgcacacaaaatacacatgaATTCAGAACAGCTTTTCTTGTATTCTGTCCAGTAGTCTGCTGGCCTTTGTGGAGGCACTGTACAAAAACATGCTTTACACTCCCCCATCTGGTAGAAAAAGGGAAAGGCACTTCAGATGGGGGTCCAGATAAATGCTCCCTTTCTCAGGTGTCTGCTGTGCTGTGGTGTAAATGTGATATCCGTTACTCACCACAGCTCAGAGGACAACTCGCTCATGGAGGGCTGACACACTTTCGAGTCCCAGCATGCAGCAGGAGCTGTGGCTGTGGGCCCAGTCTCAGCTGCTTGCTTCGCTGAACGCAGTGTGTGCCATGAGAGCGGCCGCCTCACACCCGCTGCCCACGCCCCCGTCCCAGCTCGAGCTGAAGCGTGCCCTGTCCGGCCCAGACGGGCCTGGCCAGACCCACAACGCACCAAACTCACCAAGACCAGGACACCTCAGGACCCGCACGGCCAACAACACGTTCAACAACAGCCCCGTGTTCCCACAGAACAGAGAAAATGCTGATAAGAACAGTGCTGGTGAAAGCCCCTGGAACCTGCACAACCCTGTGAAGGCCTCAAGGAGCCATCAGGAACTCCACAGAGAGCTCCTACTAGCCCACAAGAAGGAGGGCAGAGGGCTGGTAGTGTGCTGCAAGCCGGAGCTCCAGATGGTTCTGGAGAGGCGGAAGAGGGAGCAGACACAgaaggaggagggagagagggacagGAGCCCTCTGGAACAGGTCCTACTTAAAAGACAGCAGAAGCACGAGGAGAAGGAGAAGGAGCAGGAAGAGAAGGTTCGTCAGGAGATTCAGCTTCTGGAGTTCGTCAGAGTGAGACAGAACTTGAGAAAAGTTCATACAGCTCTACACAAGAACATCAGCTCCTGAAGCTCTTCCACGGGAGAAGCTGGCTGTGACTGCATGAACAGAACACTGGAAACATGCAGAAGCCTCTTCAACCTTTTCTACAGAACCTTCAGTCACACTGACTGAGGAGGGGGTCATCGTTCTTTAATGCTGTGGTCACCCTGCTGGAAACCTTAGTGgctttcacactgttttctgCCTCTGTGTTTTTAGTTAATCAGAATCAGTTTAGAACATTCTACCCCTTCATTACTTTGTgttagaaataataaaacaagttcatataaaaGTGA
>XM_022670655.1
aataactccAGGACCCCTTttagaaactaatcccgtccgaaAAGGGGCAGTTAAGAAAATGCTATGAAATGGGCTGAACgtaaaaaaacaaccaacagagcattGCGAtttgatggtgtttgttagTGTAACCATTGTCAATTTTTAGACTAAATGGACTTCACAGAGATATTTTACTCCAAAATAcgttggagcatttctattgattcattcataattaattttaacCCTATGTATTAAGTACACCTGCCAGATTTGCATTATGtcaaacagtaaaaacaatCCCAAAACAGGagatatatttaatttgtttgatGCAATACATTTTAGAAGCAGATAAGAACTATATGAGCAGATTTGCTGTGTGCTGTCACTCTTGTGACACAATTTTATCTGAGATAACAAATAAATCATGTGCGGTTCTGGCAGGCATTTGACCAGCAGATGAATTATAGATTTCCACTTAGGTGAAACTCAATCTCTCCactcctctcgctctctctctctctctctctctctctttgctttcATTGCTTTCATTGACGACCCCAAAACATTcactcatgcacacactcacacacacacacacacatgcacacctgACCTCCCGCAGAGTCCCAGCATGCAGCAGGAGCTGTGGCTGTGGGCCCAGTCTCAGCTGCTTGCTTCGCTGAACGCAGTGTGTGCCATGAGAGCGGCCGCCTCACACCCGCTGCCCACGCCCCCGTCCCAGCTCGAGCTGAAGCGTGCCCTGTCCGGCCCAGACGGGCCTGGCCAGACCCACAACGCACCAAACTCACCAAGACCAGGACACCTCAGGACCCGCACGGCCAACAACACGTTCAACAACAGCCCCGTGTTCCCACAGAACAGAGAAAATGCTGATAAGAACAGTGCTGGTGAAAGCCCCTGGAACCTGCACAACCCTGTGAAGGCCTCAAGGAGCCATCAGGAACTCCACAGAGAGCTCCTACTAGCCCACAAGAAAGGGCTGGTAGTGTGCTGCAAGCCGGAGCTCCAGATGGTTCTGGAGAGGCGGAAGAGGGAGCAGACACAgaaggaggagggagagagggacagGAGCCCTCTGGAACAGGTCCTACTTAAAAGACAGCAGAAGCACGAGGAGGTGACGAAGGAGAAGGAGCAGGAAGAGAAGGTTCGTCAGGAGATTCAGCTTCTGGAGTTCGTCAGAGTGAGACAGAACTTGAGAAAAGTTCATACAGCTCTACACAAGAACATCAGCTCCTGAAGCTCTTCCACGGGAGAAGCTGGCTGTGACTGCATGAACAGAACACTGGAAACATGCAGAAGCCTCTTCAACCTTTTCTACAGAACCTTCAGTCACACTGACTGAGGAGGGGGTCATCGTTCTTTAATGCTGTGGTCACCCTGCTGGAAACCTTAGTGgctttcacactgttttctgCCTCTGTGTTTTTAGTTAATCAGAATCAGTTTAGAACATTCTACCCCTTCATTACTTTGTgttagaaataataaaacaagttcatataaaaGTGA

Function

NR:

description
PREDICTED: uncharacterized protein LOC108442090

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670651.1 True 1531 mRNA 0.47 4 40150647 40159235
XM_022670652.1 False 1506 mRNA 0.48 5 40150647 40160654
XM_022670653.1 False 1529 mRNA 0.47 4 40150647 40159236
XM_022670654.1 False 1500 mRNA 0.48 5 40150647 40160654
XM_022670655.1 False 1524 mRNA 0.47 4 40150647 40159237

Neighbor

gene id symbol gene type direction distance location
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding downstream 9652 40126214 ~ 40140995 (-)
gpkow NA coding downstream 308701 39830654 ~ 39841946 (-)
timm17b timm17b,LOC107722912 coding downstream 329193 39815860 ~ 39821454 (-)
praf2 praf2,LOC107691574,LOC107756831,LOC107565129,LOC107702816 coding downstream 335626 39806607 ~ 39815021 (-)
LOC103034295 cacna1f,LOC108426741,LOC107756819 coding downstream 347995 39757462 ~ 39802652 (-)
LOC103039838 LOC108442080 coding upstream 32839 40193493 ~ 40225510 (-)
LOC103037644 rbm39b,LOC108442077,LOC108265754,LOC106566652,LOC105906838 coding upstream 131135 40291789 ~ 40304589 (-)
LOC111192686 LOC107724755,LOC107570510,LOC107702833,LOC108265753 coding upstream 147840 40308494 ~ 40310734 (-)
LOC103040464 slc12a5b,LOC107550951,LOC108265753,LOC105007608,LOC100697313,LOC108232092,LOC103467545,LOC108442076,LOC107683884,LOC107747216 coding upstream 151065 40311719 ~ 40432211 (-)
eif2d eif2d coding upstream 332044 40492698 ~ 40508889 (-)
G57729 kdm5c non-coding downstream 25701 40121485 ~ 40124946 (-)
G57704 LOC108442091 non-coding downstream 60396 39987484 ~ 40090251 (-)
LOC111192684 NA non-coding downstream 183327 39912120 ~ 39967320 (-)
G57671 pqbp1 non-coding downstream 321295 39822681 ~ 39829352 (-)
G57623 NA non-coding downstream 429035 39719431 ~ 39721612 (-)
G57748 NA non-coding upstream 873 40161527 ~ 40162104 (-)
G57754 NA non-coding upstream 2330 40162984 ~ 40164280 (-)
G57782 NA non-coding upstream 94913 40255567 ~ 40255816 (-)
G57788 NA non-coding upstream 130323 40290977 ~ 40291186 (-)
G57916 NA non-coding upstream 503866 40664520 ~ 40664764 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 31552 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 587726 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 1845181 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2823911 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2851040 37281113 ~ 37299607 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 4746 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 588087 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1235432 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2942216 43102870 ~ 43107623 (-)
G58537 NA other upstream 3521670 43682324 ~ 43682684 (-)

Expression


Co-expression Network