LOC111192686 (LOC107724755,LOC107570510,LOC107702833,LOC108265753)


Basic Information

Item Value
gene id LOC111192686
gene name LOC107724755,LOC107570510,LOC107702833,LOC108265753
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40308494 ~ 40310734 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670670.1
GACCCTAGcctccaaaacagaaaaaatgaagaaacatTCCACGAATTTGAGAGTGCGGCTTCCTGCACTTGTGTTTGCGCTGGAGGTCATGATCGTGGTACTATATATTGTCTTTGTGACCTACGATGACCAAACCAATGCATTTCTGCAGAACAATGAGACAAAGCCATTGGAGAACGCTGTCTATAAGGACTATCCCTTTTTTGCGGATATCCAGGTGATGATCTTTATTGGATTTGGCTGTCTTCTGGCCTTCTTCCGGCATTATggattcggtggaatggccttTAATTTTCTGATGGCGACATTTGCCATTCAGTGGGCCATTTTGATTCAGGGCTTTTTTCAATTCTATGACAATGGAAAAATCCATCTGGGGGTAATAAATCTGGTCAACGCAGAGTTTGTTTGTGCCGTTGTGCTGATCTCATTTGGAGCAGTGCTGGGGAAGACGAGTCCTGTGCAGTTACTAGTCATGGCCTTGTTGGAGGTTCCTGTGTTTGCTGTTGCAGAATGGATTGTTGTCAAGTACCTGAAGATCAATGATGCTGGTGGCTCCATCCTCGTTCACCTGTTTGCTTGCTACTTTGGACTGGGTACCACCTTCATCCTGTATAGACCAAGTCTGAACAAGGGTCATTCAAAAGAATGTACCAGCTATCATTCCGACATGCTGTCTGTGTTGGGTACCTTGTTCCTCTGGGTTTTCTGGCCCTCCTTCAATTGTGCACTGACCCTCAGAGGGGACGACCAGCACAGAGCCATCCTCCACACTTTCATAGGATTGAGTGCCTCCACAATAACTGCATTTGCCCTCTCTGCCATGCTCAGCAAGAATGGAAAGCTTAGCATGGCTGATGTCCAGAACGTTACCTTGGCTGGTGGGGTCACTGTTGGTGCATCGGTGGACATGATGATCTCACCCGGTGCTGCTTATGTGTTGGGGATGCTGGGTTGCACTGCTTGCATGCTGGGATATAAATACCTGAGCCCTTTTCTTGCACAGAAATTGCGCATTCAGGACCAGTGTGGCATTCACAACCTCCATGGATTAACTGGACTAATTGCAACTATAGCTGGAATTTGTGCCATCTTGCTGGCCAGTGAGGAGACATACGGCACCAGCCTCTACCAGACTTTCTCTTATCGTGCACCCCAGGAGGGAGACCCTCGTTTGGCGGAACTACAGAAATTGATCCCAGGATTAGAGGCAGGCTTGGGCCGCACTGCACAGGAACAAGCCTTGTACCAACTGGCTGCACTGGGAACCGCCATAGCTATAGCTGCAGTGGGAGGTATGCTGACTGGGCTAGTACTCAAGCTACCATATCTCGCCTCCCCCACTGACGAGTCCTGTTTTGATGATGAGATCTTCTTTAATGTTCCTCTACATACTAATTATGTACCTGAGTTACAGGTCCCAGTGGGCTCAGAGATGGAAAACAAGCAGGTACTAGCTATGGAGTGCCGCACATAAGGCACAAAAGAAACAGgcaatgagaaaaagagagagaacccAGGCTCATAGATGTATGAAAGTTTCACAAGCCTAGCAAAATTGCTAACATTATGGTGCTGTGCACAAATTAGCCCCTTCACCAAATCacccctttttaaaaaattgtactACTTTTgtcacaaattaaataaaatgttctttatttataCTTGTATATATCCATTCATAAAAGCACTTAAAGAAACATACAGGTAAAGGAAATAACTGATTTCTCACAAAAGTGAGAAATATTATACATGGTGATTTATTAGAAAGGGTTTATGGTATGGGAATGGTTATTGCCTAATTTGGTTTGAAGGCTTTTGGTGGttgaaaaactatatataaaacactcCAGTTTTTACAAATACTGACTAAAGTCAACCTTATAAAGCTTATCCAGAAACATGAAAACAGTGCTGTGTATCATTCATgaatttttaccttatttgaaGTACAGTATCTCAGTATTTTACTTCATGTGACTTGAAAACAATAAGTGTCTCCATTTATACATTACACTAAACATCCTGTAAATTAGTGCTTTATGTTATATCTTGACTGGCAGTAACCTTTCGTGTTAACACTTCTACTGTCTACTGATTTACAcataataaaactgtaaaacgaT

Function

NR:

description
PREDICTED: ammonium transporter Rh type B-like

GO:

id name namespace
GO:0072488 ammonium transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0015695 organic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008519 ammonium transmembrane transporter activity molecular_function
GO:0015379 potassium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670670.1 True 2129 mRNA 0.43 2 40308494 40310734

Neighbor

gene id symbol gene type direction distance location
LOC103037644 rbm39b,LOC108442077,LOC108265754,LOC106566652,LOC105906838 coding downstream 3905 40291789 ~ 40304589 (-)
LOC103039838 LOC108442080 coding downstream 82984 40193493 ~ 40225510 (-)
LOC111192685 LOC108442090 coding downstream 147840 40150647 ~ 40160654 (-)
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding downstream 167499 40126214 ~ 40140995 (-)
gpkow NA coding downstream 466548 39830654 ~ 39841946 (-)
LOC103040464 slc12a5b,LOC107550951,LOC108265753,LOC105007608,LOC100697313,LOC108232092,LOC103467545,LOC108442076,LOC107683884,LOC107747216 coding upstream 985 40311719 ~ 40432211 (-)
eif2d eif2d coding upstream 181964 40492698 ~ 40508889 (-)
LOC103022532 pabpc1l,LOC108265404,LOC108414618,LOC107702880 coding upstream 242902 40553636 ~ 40563311 (-)
LOC103023259 ywhaba,LOC103023259,LOC108414621,LOC107708121,LOC107584065,LOC107595428,LOC108412308 coding upstream 264124 40574858 ~ 40579584 (-)
LOC103023575 LOC103023575,LOC108414617,LOC108433700,LOC105906813,LOC103460371,LOC100694607,LOC103156966 coding upstream 269164 40579898 ~ 40584423 (-)
G57788 NA non-coding downstream 17308 40290977 ~ 40291186 (-)
G57782 NA non-coding downstream 52678 40255567 ~ 40255816 (-)
G57754 NA non-coding downstream 144214 40162984 ~ 40164280 (-)
G57748 NA non-coding downstream 146390 40161527 ~ 40162104 (-)
G57729 kdm5c non-coding downstream 183548 40121485 ~ 40124946 (-)
G57916 NA non-coding upstream 353786 40664520 ~ 40664764 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding upstream 430780 40741514 ~ 40748539 (-)
G57920 NA non-coding upstream 450761 40761495 ~ 40762172 (-)
G58031 mthfr,LOC107687111 non-coding upstream 1138479 41449213 ~ 41452982 (-)
G58145 NA non-coding upstream 1541855 41852589 ~ 41944829 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 129353 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 189399 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 745573 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 2003028 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2981758 37302047 ~ 37326736 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 438007 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1085352 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2792136 43102870 ~ 43107623 (-)
G58537 NA other upstream 3371590 43682324 ~ 43682684 (-)
G58649 NA other upstream 4057166 44367900 ~ 44368368 (-)

Expression


Co-expression Network