LOC103024512 (mapkapk2,LOC108414051,LOC107683909,LOC107550950)


Basic Information

Item Value
gene id LOC103024512
gene name mapkapk2,LOC108414051,LOC107683909,LOC107550950
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40512253 ~ 40530993 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670672.1
ACATGACGTGACCCGTGAAGCCAGACAGGTCTGAGTGTGGTCTCTGTGTGATTATTAGATAGGCTGCAGTTTAACAGCACTGATCAGTGTTATTATCAGAATGTTAATAAACTAGGTAGTTTTTAGTGCGTATGATTTTCTGTAGATCTGTAGAGTGAGGAGTGGAACAAGAGGACCAGAGAGGAGTTTCTTCAGCTGAGTGATCTAACAGAGTGATCTAACAGAGTGATCTTTGGCCGATCACTCTGAGAGTGCTGACCCCGGGGCTCTGTGATTAGATGAGGGCTGCGGGATGTCCGTGTGTCcggcggcggcagcagcagcagtagtggaGGAGGCGCTGGCCGGAGGCGGTGCGTGTCTCGCGGGGAGCGGTCAGgctaaagctctgcttcttcttcCAGACTCTTCTTAACCGGATAGTCCTGAAATCCCTTAATCGTCCCTGAATCAGTTCAGCAGAGCAGCGCGGAGGAGGACACTATGAGGATTTCTGCTCCTCCATCATGTTCCTAAACACTCAGAGTGACCCCGAGGCTGCCGGACAGCAGGAGGGGCTCCTGTCCCCCCAGCCCGCTCACAAACTCAGCCAGAGGATCAAGAAGAAAGTGATCACTGAGGACTATAAGCTCTCAGGGCAGGTGCTTGGAGTTGGCCTCAGTGGAAAAGTCTTCGAGATCTTTCAGAGAAACACGGGAGAGAAGTTCGCTCTGAAGATGTTGAAGGACAATCCGAAAGCTCGTAGGGAGGCGGAGCTTCACTGTAGGGCGTCTGTGTGTCCCCGGATTGTGCGCATCGCTGACGTCTTCGATAACTTCTACCAGGGGAAGAAGTGTCTTCTTCTCGTCATGGAATGCATGGACGGAGGTGAACTATTCAGACGTATTCAGGCACGGCGTGAGCAGGCTTTCACTGAGAGAGAGGCCTCGGCTATTATGAAGAACATAGGAGAAGCCATTGAGTTTCTACATTCCATTAACATAGCACACAGAGACGTTAAGCCGGAGAATCTGCTCTATACATCATCACATCCTGACGCTCAACTCAAGCTCACAGACTTCGGATTCGCCAAAGAGACCACAACCCAGAGCTGCCTGGCCACGCCCTGCTACACCCCCTACTATGTGGCCCCTGAGGTTCTCGGTCCTGAAAAATATGACAAGTCATGTGACATGTGGTCACTGGGCGTCATCATGTACATACTATTGTGTGGATATCCACCCTTTTACTCAAACCACGGCGTGACGCTGTCCCCCGGAATGAAGAAACGGATACGGAACGGCCAGTACGAGTTCCCCAACCCTGAATGGTCAGACGTGTCAGAAGAAGcaAAGCAGCTGATTCGCCAACTACTGAAAACTGACCCTACAGAGAGAATGACCATCACCGAGTTCATGCGCCATCCCTGGATCAATCGATCAATGAATGTACCTCAGACTGCTCTCCACACCAGTCAGGTCCTGGCAGAAGAAAGCCATGTCTGGGAGGAAGTCAAGGAAGAGATGACCAATGCCTTGGCCACAATGAGAGTGGACTACGAGCAAGTCAAAATCAAGACCATCGAGGACTCGTCCAATCCACTTCTTATGAAGAGAAGGAAGAAATTAGCTAATGCACCACCAGAATCACCAGggctataaaaaaacaaaccacacaaataccagcaacacacacacacaaacacacattcacacatacgCGTACAGGTTCAGGTCACAAGGGGCTCTTGCATATCTTTAGACTGCACCAAGTACCAGAGCTCACCTTGATCCACAGTCATCATGACTGGACTCAGACTGCAGAGACCGCAGTTTTGCCTTTTGATTTGTATATTCCAGAGTCCACCAAAGACCAACACAACACAGGGAATTCTCACCTCAAATTTTTAATGATGTGTTTAGCTTTTGttctcttttaataaataaaaaagaattggTTTGTCAGTA

Function

symbol description
mapkapk2 Enables protein serine/threonine kinase activity. Involved in several processes, including peptidyl-serine phosphorylation; regulation of gene expression; and vascular endothelial growth factor receptor signaling pathway. Located in centrosome; cytoplasm; and nucleoplasm.

NR:

description
PREDICTED: MAP kinase-activated protein kinase 2-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04443 MAPKAPK2; mitogen-activated protein kinase-activated protein kinase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670672.1 True 1946 mRNA 0.49 10 40512253 40530993

Neighbor

gene id symbol gene type direction distance location
LOC111192734 LOC108414049 coding upstream 25679 40483010 ~ 40486574 (+)
LOC103035984 LOC103035984 coding upstream 226952 40258521 ~ 40285301 (+)
LOC103036504 ren,LOC107727110,LOC107570508,LOC106566646,LOC107747224 coding upstream 264967 40237042 ~ 40247286 (+)
LOC103035670 NA coding upstream 362181 40144064 ~ 40150072 (+)
kdm5c kdm5c,LOC108265475,LOC107550909,LOC107747206,LOC107570512,LOC107724909,LOC107702826 coding upstream 387218 40096263 ~ 40125035 (+)
LOC103023889 LOC108414619 coding downstream 12516 40543509 ~ 40553151 (+)
trnaw-cca_40 NA coding downstream 68998 40599991 ~ 40600062 (+)
wrap73 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 coding downstream 189811 40720804 ~ 40748739 (+)
kiaa2013 kiaa2013,si:dkeyp-104h9.5,LOC107678452,LOC107698843,LOC107595762,LOC107602448 coding downstream 774317 41305310 ~ 41315208 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding downstream 787732 41318725 ~ 41335582 (+)
LOC111192687 NA non-coding upstream 177195 40315414 ~ 40335058 (+)
G57790 LOC108265753,LOC107570510,LOC107724755,LOC107702833,LOC104935322 non-coding upstream 199425 40308495 ~ 40312828 (+)
G57773 rbm39b,LOC108442077,LOC108265754 non-coding upstream 211738 40292808 ~ 40300515 (+)
G57763 NA non-coding upstream 286598 40223105 ~ 40225655 (+)
G57755 NA non-coding upstream 333089 40178607 ~ 40179164 (+)
G57824 ywhaba,LOC103023259,LOC108414621,LOC107708121,LOC107584065,LOC107595428,LOC108412308 non-coding downstream 16562 40547555 ~ 40579801 (+)
G57823 LOC108414618,LOC108265404 non-coding downstream 22675 40553668 ~ 40556691 (+)
G57831 LOC103023575,LOC108414617,LOC108433700,LOC103460371,LOC103156966,LOC108265406,LOC100694607,LOC105906813 non-coding downstream 48922 40579915 ~ 40584488 (+)
G57834 NA non-coding downstream 56415 40587408 ~ 40588158 (+)
G57825 LOC103026801,LOC108414620,LOC107756851,LOC107702881,LOC107573971,LOC107691553,LOC107566963,LOC108265407 non-coding downstream 88576 40619569 ~ 40627558 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 421982 39967090 ~ 40090271 (+)
G57664 NA other upstream 465786 40044653 ~ 40046467 (+)
frmd3 frmd3,LOC107678471 other upstream 1141668 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 1358777 39109244 ~ 39153476 (+)
G57066 NA other upstream 3506455 37005273 ~ 37005798 (+)
G57856 tp73 other downstream 144047 40675040 ~ 40680555 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 843696 41374689 ~ 41377445 (+)
G58025 NA other downstream 907034 41438027 ~ 41438911 (+)
ndufa7 ndufa7 other downstream 1504846 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 1677728 42208721 ~ 42281970 (+)

Expression


Co-expression Network