LOC103024844


Basic Information

Item Value
gene id LOC103024844
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40632068 ~ 40638773 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670676.1
CGTTCTGTCAATAGGAGTGTCATCTGATTCTCTAGACTCTTCCTTGAGTGTATTGTATAAATGCAGAGAGACTTTGGGTGGTAATCTCACCTGGAACACTAAACCTTCAAGACCTGTGGCAGCACAATGTTCTTCCTGAAGCTTTCTCTACTCACTCTGCTGATTGCAGCTCATGGTTTGCTTTCTGCAGGCAACAGTGTGACCTGTGAAGGCAGTACTGCTGTTCTGACATGCAGAGCCGGTGTATTAAAAATCGAGGGTGCTAACTATGGTCGAACTGATTCCACCACGTGTTCTGCTGGACGACCCACCAGTCAAATCACCAAAACTGACTGCTACGCCACCAACACACTGACTTTAGTTAAGAGCAAATGTGACGGCAAGATTACCTGCAGTGTCCCTGCTTCAAACAGTGTCTTCTCTGACCCCTGTGTCAATACATACAAATATCTGAGCATGAGGTATACCTGTACGACAGAGACCAGTGTGACCTGTGAAGGCAGTACTGCTGTTCTGACGTGTGGATCTGGTGTAATAAAAATCGACAGTGCTAACTATGGAAGAACTGACCCCACCACGTGTTCTGCTGGACGACCCACCAGTCAAATCACCAAAACTGACTGCTACTCCAGCAACACGCTGTCTGTAGTTAAAACAAGCTGTGACGGCAAGACTACCTGCAGCGTCCCTGCTTCAAACAGTGTCTTCTCTGACCCCTGTGTCAATACATACAAGTTCCTGATCATTAAGTACTTCTGTGCAGTTGAACTAATACATCAATGGATGGACCTATGATCAGGTCTTCTGCTTTTCTGGAaagaaattaaatcattttaaacgtATGCACCCTTGCGGTGTCTTGAAGAAGAGTGACAGGAGATTTGTTGTTAGTATAATCCTTGCATTCATGTTCTTCATCAATAAGTCTATCTTGGCTGATAAAGACTGTAtagtcagtttttatttccttaatcaaaatcattaaaaagaaTTGCATTACAA

Function

GO:

id name namespace
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670676.1 True 1002 mRNA 0.44 9 40632068 40638773

Neighbor

gene id symbol gene type direction distance location
LOC103026801 LOC103026801,LOC108414620,LOC107756851,LOC107702881,LOC107573971,LOC107691553,LOC107566963,LOC108265407 coding downstream 4417 40619650 ~ 40627651 (-)
LOC103026522 eif2s2,LOC103026522,LOC108414623,LOC107739644,LOC107756850,LOC107566961,LOC107666094 coding downstream 16423 40609610 ~ 40615645 (-)
trnaw-cca_41 NA coding downstream 25968 40606029 ~ 40606100 (-)
LOC103023575 LOC103023575,LOC108414617,LOC108433700,LOC105906813,LOC103460371,LOC100694607,LOC103156966 coding downstream 47645 40579898 ~ 40584423 (-)
LOC103023259 ywhaba,LOC103023259,LOC108414621,LOC107708121,LOC107584065,LOC107595428,LOC108412308 coding downstream 52484 40574858 ~ 40579584 (-)
rer1 rer1,LOC107678415,LOC107710784,LOC107698848,LOC107595758 coding upstream 13801 40652574 ~ 40662571 (-)
tp73 tp73 coding upstream 27698 40666471 ~ 40726479 (-)
prdm16 prdm16 coding upstream 125082 40763855 ~ 41072239 (-)
mfn2 mfn2,LOC107748965,LOC107710790,LOC107602467,LOC107678429 coding upstream 608613 41247386 ~ 41278478 (-)
plod1 plod1,plod1a,LOC107698842 coding upstream 642388 41281161 ~ 41296693 (-)
G57788 NA non-coding downstream 340882 40290977 ~ 40291186 (-)
G57782 NA non-coding downstream 376252 40255567 ~ 40255816 (-)
G57754 NA non-coding downstream 467788 40162984 ~ 40164280 (-)
G57748 NA non-coding downstream 469964 40161527 ~ 40162104 (-)
G57729 kdm5c non-coding downstream 507122 40121485 ~ 40124946 (-)
G57916 NA non-coding upstream 25747 40664520 ~ 40664764 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding upstream 102741 40741514 ~ 40748539 (-)
G57920 NA non-coding upstream 122722 40761495 ~ 40762172 (-)
G58031 mthfr,LOC107687111 non-coding upstream 810440 41449213 ~ 41452982 (-)
G58145 NA non-coding upstream 1213816 41852589 ~ 41944829 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 452927 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 512973 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 1069147 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 2326602 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 3305332 37302047 ~ 37326736 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 109968 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 757313 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2464097 43102870 ~ 43107623 (-)
G58537 NA other upstream 3043551 43682324 ~ 43682684 (-)
G58649 NA other upstream 3729127 44367900 ~ 44368368 (-)

Expression


Co-expression Network