clcn6 (clcn6)


Basic Information

Item Value
gene id clcn6
gene name clcn6
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41405371 ~ 41436478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670701.1
TCAGTAGTTAGCTGTTAGTGAGTGGTTGGATCATGGCGTGTTGTGGGAGCTGCTTGTGCtgtcagtgctgctgctgcacagaAGGAGAAACCAGAACACCGGAGGAGCTGACCATTTTGGGGGAGACCAGGGAAGATGAAGATGAGATACTGCCAAGGAAAGACTATGAGAGTTTGGATTATGACAGGTGTATTAATGAGCCCTATGTGGAGGTGCTGGAGGGGCTGGACAATAAGAAAGCCAAGAAGTATGAAGCTGTCAAGTGGATGTTGGTGTTTGCCATTGGAGTGTCTACAGGCTTGATTGGCGTCTTTGTGGATTTCTTTGTGCGACTCTTCACCCAGCTGAAGTTCAGACTGGTTGGACAATCTGTGGAAGAGTGCAGTGAAAATGGATGCCTTGCCTTGTCCTTGGTTGAGCTTCTAGCTTTCAACATGGCCTTCGTATTCATTGCCAGTATTCTGGTTCTGATTGAGCCTGTGGCTGCTGGATCAGGCATACCAGAGATTAAAAGTTACCTAAACGGAGTGAAGATTCCAGGAATCGTGCGGCTTCGAACCTTTCTCTGCAAAGCTGTCGGGGTCCTGTTTGCTGTTGCTGGCGGTCTGTTTGTGGGGAAAGAAGGGCCGATGATCCACAGTGGAGCGATTGTGGGAGCTGGACTACCCCAGTTTCAGAGCATCACTTTCAAGAAAATCCGCTTCCAGTTTCCCTATTTCCGTAGTGACAGGGATAAGAGGGATTTTGTGTCTGcgggagcagcagcaggagtaGCGGCAGCTTTCGGAGCTCCGATTGGGGGAACCCTTTTCAGTCTGGAGGAGGGATCTTCCTTCTGGAACCAGGCCCTGACGTGGAAAGTGTTGTTCTGCTCCATGTCTGCCACCTTTACCCTCAACTTCTTCCGCTCTGGAATCAACTACAACAAGTGGGGCTCGTTTCAGCTCCCTGGCTTGCTCAACTTTGGAGAGTTTAAGTGTCCAGATGGGGATAAAAACTGTCACTTGTGGACGGCGGTGGACCTGGCCTTCTTtgtgctgatgggtgtggttggAGGTCTGCTTGGCGCCATGTTCAACTGCATCAACAAGCGGCTCGCCAAGTACCGCATGCGCAACGTCCATCCCAAAGCTAAATTCATCAGGGTCTTGGAGAGCCTGCTGGTCTGCATGGTTACATCTGTGGTGGTGTTCATGGCCTCCATGACTTTAGGAGAGTGCAGGGATTTGGCCTCCCCTACTGCTAACAACACAACAGCAATAgTATCTGCGAACGAGGACGTGAACTCATCCATACGACAGTTCTTCTGCTCCAATAAGACTTACAACGACATGGCAACACTTTTCTTCAACCCTCAGGAGATTGCAATACATCAGCTCTTCCACCAAGATGCAACCTTCAGTCCGGTCACCCTGTCACTCTTCTTTGTGCTGTACTTTTTGCTGAGCTGTTGGACATATGGCGTCTCTGTCCCCAGTGGACTCTTCGTCCCTTCACTGCTCTGTGGAGCATCGCTTGGACGCCTAGTGGCCAACGTCCTTAAAATGAATCTGGGCATGCATATCTATTCTGGGACCTTCGCTCTGATTGGAGCGGCTGCTTTCCTGGGAGGTGTGGTGCGCATGACCATCAGCCTGACAGTCATCCTCATAGAATCGACCAATGAGATCACCTATGGCCTTCCCATCATGATTACACTGATGGTGGCTAAATGGACGGGGGATTTCTTTAATAAAGGCATTTATGATATCCACATCCATCTGAGAGGAGTACCGCTGCTGGAGTGGGAGACTGAAGTAGAAATGGACAAACTGACCGCCAGTGACATTATGGAGCCCAACCTCACATATGTATACCCTCACACCCGCATTCAGTCTCTGGTCAGCATCTTGAGGACCACAGTCTACCATGCCTTCCCCGTGGTCACAGAGAACCGCGAGTACGAGAAAGAGTTCATGAAGGGCAACATCCTCGTCAGCAACAACATCAAGTTCAAGAAAACCAGCGTGTTAACACGTGCGGGGGAGCAGAGACGGAGATGTCAGTCGATGAAGTCATATCCTTCCAGCGAGCTGCGCAACGTGTGTGATGAGCAGGTGGGGGTCGAGCCAACGGAAGAGGGGCAGGACATGCTGCAGCAGATGCTGGAGAGGAGACACGTGCCCTATCCTAACCTGTATCCGGACCAGTCCCCCAGTGAGGAGTGGAGTATGGAGGAGAGGTTCCGTCCTCTCACATTTCACGGCCTTATCCTGCGCTCTCAGCTGGTCAACCTGCTGATCCGGGGGGTGTGCTATGCAGAGAACCAGTCGagTGCATCTCAGCCGCGGCTCTCGTACGCAGAAATGACGGAGGACTACCCCCGCTTCCCCGACATTCATGACCTGGACCTAGCTCTACTCAACCCACGCATGATTGTGGATGTGACTCCATACATGAACTCTAGTCCATATTCAGTCTCACCAAACACGCACGTCTCGCAGGTGTTTAACCTGTTCAGGACCATGGGGCTGCGGCACCTACCAGTGGTCAATGCAGTAGGAGAGATAGTGGGAATAATCACGAGACACAATTTGACCCATGAGTTTTTGATGGCCAAGCTCCGGCAGCATTACATCACCATCTGAGACGAGCGCTCACTCTGTCCGGGATCGGAGTGCCCTCCCCTGCTGCAGAACAGTTGGGCCCAGACAAGCATGGGCTGGCCTGAACCCATACTAGACCACTGACGGGCCTGAAACCCACCTTGGTCTCGCCCTAAAGCCATTCTGGCCACTTTCTGGACCTCTAGAGCATGGTACTTTGTTCTTATTGACTAATTGACTGACACATCTGCATACCTATATGCACACATGCAGTACATACATGTACACATACATGAAGACATTTCCAAGTACATCACACTAATTTAAAACCTGGGACTTGAGCTCACTCTTCTTTCGGACAAAAAGCCGGCCACATTCCCATCGACGAAGAGTACCTTGCCTTGCTTTACCATCCTCACTGTAGCACTTTTATTTTGGGCATCGATTTTGTGttgttgtatgtttttttgtttttgctatgGTTTCAggttgtacatttatttatgtgaACATGCTTTTGCactaaacatggtaaacaaaaaaaatgactgaaCTGGAAAGCTGGTAGTGGACATTTTTGGAAAGAATGTCTCCAACATTCCTTGCAGCTTAGaaataactgtttttgtttgtgtagtttttttttcttttactaaaaataatgtataaatacaatataatgtataatcaTATTTATAGTGTTAATATGTCAGAACTGTAGGCCAATAATGTCCAGTCCAGCTCAGCTTTTGGAGATTTGCCATCCTGCAGactttagtttggtttgaaggTTTTAGCTTATATAGACTCATTagaaaaatagttgcacccagaaggtaTAGACCAACAGGAATGAAATTTAACATGCAAATTAGTTAACTTAACATTAGCGACTAATAGCTAGGGCTAGCTGCGGTTACCGGCTAATGCCGCCGAGAGTTCCACACTGAAgtaccctgagtgttctggtaagccagggcgttATTAGCTAACgtttcatcccacgtagcttgttttaacacagtaaacac

Function

symbol description
clcn6 Predicted to enable chloride transmembrane transporter activity. Predicted to act upstream of or within chloride transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in coronary artery disease. Orthologous to human CLCN6 (chloride voltage-gated channel 6).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K05015 CLCN6; chloride channel 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670701.1 True 3616 mRNA 0.49 23 41405371 41436478

Neighbor

gene id symbol gene type direction distance location
plod1 plod1,plod1a,LOC107698842 coding downstream 108678 41281161 ~ 41296693 (-)
mfn2 mfn2,LOC107748965,LOC107710790,LOC107602467,LOC107678429 coding downstream 126893 41247386 ~ 41278478 (-)
prdm16 prdm16 coding downstream 333132 40763855 ~ 41072239 (-)
tp73 tp73 coding downstream 678892 40666471 ~ 40726479 (-)
rer1 rer1,LOC107678415,LOC107710784,LOC107698848,LOC107595758 coding downstream 742800 40652574 ~ 40662571 (-)
LOC103033502 NA coding upstream 21518 41457996 ~ 41493671 (-)
LOC103034037 NA coding upstream 57126 41493604 ~ 41513087 (-)
pex10 pex10 coding upstream 80487 41516965 ~ 41527890 (-)
LOC103035734 NA coding upstream 543079 41979557 ~ 42034244 (-)
LOC103037059 gpr153,LOC107687122,LOC107693426 coding upstream 650910 42087388 ~ 42177716 (-)
G57920 NA non-coding downstream 643199 40761495 ~ 40762172 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding downstream 656832 40741514 ~ 40748539 (-)
G57916 NA non-coding downstream 740607 40664520 ~ 40664764 (-)
G57788 NA non-coding downstream 1114185 40290977 ~ 40291186 (-)
G57782 NA non-coding downstream 1149555 40255567 ~ 40255816 (-)
G58031 mthfr,LOC107687111 non-coding upstream 12735 41449213 ~ 41452982 (-)
G58145 NA non-coding upstream 416111 41852589 ~ 41944829 (-)
G58152 NA non-coding upstream 439785 41876263 ~ 41934574 (-)
G58149 plch2 non-coding upstream 463632 41900110 ~ 41903678 (-)
G58159 NA non-coding upstream 474305 41910783 ~ 41911110 (-)
G58022 LOC103032860,LOC108432146 other downstream 6893 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 649357 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 1226230 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 1286276 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 1842450 39521544 ~ 39562921 (-)
G58435 aaas other upstream 1666392 43102870 ~ 43107623 (-)
G58537 NA other upstream 2245846 43682324 ~ 43682684 (-)
G58649 NA other upstream 2931422 44367900 ~ 44368368 (-)
G58678 NA other upstream 3037681 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 3149828 44586306 ~ 44622074 (-)

Expression


Co-expression Network