plch2 (plch2,LOC107691057,LOC107602463)


Basic Information

Item Value
gene id plch2
gene name plch2,LOC107691057,LOC107602463
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41785640 ~ 41903713 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670704.1
ACATACCAGTAGACAATGTGTCAGAATTTCACGCAACGTTGGAGGAACGTCCACTGCTTCTGCTGCTTTTGACATCTTCTGAACTTCTTTTCAAGTCATCCATTAAAAGGACAGACAGTAAAAAAGCCAGAGAtcgtcttttttctttttttttgagcttCCAGAAGCTCCGGAAGCATGAGCGCTGCAGTGTTCAGTGTGGGACCCGTGTCGTCGGTCCTCATGCCGCCATCAATGGTGCACTCTGGTCGGCCCGAGGTTGGGCACGAGCGAGCCTTCACGCCGATATCTGGTGCTTCTTTCACCAAAGCTCGCCACAAACTGAGCCTGTCTCGCCTGATCGAAGACTTCTTCTGGATTGGTGGGAGCATCGTCGCTGGCTCCAAGTGGAAGCTGGGCATGTTTGtgGAGAAATGCATGAGCTCAATGCAGACAGGGACTCAGATGGTGAAGCTGCGGGGCGGCTCCAAGGGCCTGGTGCGCTACTTCTACCTGGACGAGCACAAGTCCTGCATCCGCTGGAGGCCCTCCAGGAAAAACGAGAGGGCTAAAATCTCCATCGACTCCATCCGGGAGGTGTGTGAGGGTAAGCAGTCTGAAATTTTCCAGCGCTACGCAGATGGCAGCTTTGACCCCAACTGTTGCTTCAGCATCTACTATGGTGAACACATGGAGTCTCTTGACCTGGTGTCTGGCACGGGCGAGGAGGCACGCACCTGGATTACTGGCCTTAAGTACCTTATGGCGGGAATCAGTGACGAGGACAGTCTGGCCAAACGTCAGCGAACCCGTGATCAATGGTTGAAGCACACGTTCACTGAGGCAGATAAGAACGGAGACGGCAGTCTGAGCATCAGCGAGGTTTTACAGCTCTTACACAAGCTCAACGTCAACCTGCCCCGACAGAAAGTCAAGCAGATGTTCAAGGAAGCGGATACGGATGATAACCAGGGAACTCTGGGATTTGACGAGTTCTGCTCCTTTTATAAGATGATGTCAACTCGACGGGACCTGTACCTGCTGATGCTGACCTACAGTAACCATAAAGACCACCTGGACACAGACGACCTGGCACGCTTCCTCGAGAATGAGCAAAAGATGACGAGGGTCACCAAAGAGCACTGTCTGGAAATCGTCGCCAAGTTTGAGCCCTGTCCAGAAAACCAGAAACAGGGGGTTCTGGGGATCGACGGTTTCACCAGTTACATGCGAAGTCCATCTGGAGACATCTTTAACCCCGAGCACTACGAGGTCAACCAGGAAATGACCCAGCCTCTCTGCAACTATTTCATCGCCTCCTCTCACAACACCTATCTGATGGGCGACCAGCTGATGTCCCAGTCCAGGGTGGACATGTACGCCTGGGTGCTGCAGGCAGGCTGCAGATGTGTGGAAGTGGACTGCTGGGATGGTCAAGACGGGGAGCCAATTGTGCACCACGGCTACACCCTAACCTCCAAAATCCTCTTCAAAGACGTCATTGAAACCATCAACAAATATGCATTTGTAAAGAACCAGTATCCAGTGATCCTCTCCATAGAGAACCACTGCAGCGTTCCCCAGCAGAAGAAGATGGCTCAGTATCTGGTGGAGGTTTTGGGGGAGAAGCTGGAGCTGTCCTCCGTCAGCGCTGAAGAGTCTGGACTCCTGCCCTCGCCTGAAGCCCTCAAAGGCAAAATCCTCGTCAAGggtaAAAAGCTGCCCCCGAACATAGACGAGAACGCAGAGGAGGGTGATGTGTCAGACGAGGACAGTGCAGATGAGATGGAGGATGACTGCAAGCTGATGAATGGAGACACCTCTATGAACAGGAAGCAGGTGGAGAACGTAGCGAAGAAGAAGCTGGACAGTCTGATGAAGGAGTCGAAGATCAGAGACCGCGAGGACCCAGACAGCTTCACCATCGCCGCTCTGCCTCCGTCTGGCAAACACGACGACAAAGCAGACGCCAAGGGTAAAGGAGATGACGCGATGGACACTGGTGACGAGGCCAACCCCAGCAGCAACAAGCGCATGGGCAGGTCATTCATGGGCAGCTTCTCCAAACGCAAGAAAAAGACAAGCAAACTGAAGAAGACGTCGAGTTTTGAGGACACAGACACGGATCAGGAAAGCTCCAGCAGCGCCTCTAAAGCCCCCTTACACCACAGCAGAAGGAAGAAAACCATGAAATTATCCAGGGCTTTGTCTGACCTGGTGAAGTACACAAAATCCGTGGCCATGCAGGACCTGGAGACACAAGGTGGGAGCAGCTGGCTGGTATCATCACTGAGTGAGACCAAGGCACACCAACTGATGCAGCAGAAGCCGGCACAATTTATACGCTTCAACCAGCGGCAGCTGTCCCGCGTCTACCCCTCGTCCTACCGAGTGGACTCCAGCAACTTCAACCCGCAGCCATTTTGGAACTCCGGCTGCCATCTGGTGGCTTTGAACTACCAGTCTGAGGGCCGCGTCCTCCAGCTGAACAGAGCCAAGTTCTACACCAACGGCAACTGTGGCTACGTCCTCAAACCCAAGTGCATGTGTGAAGGTCCCTTCAACCCCATGCTGGAGGACCCACTGCCTGGGCAGATGAGGAAACAGCTGGTGCTGAAGATTATCAGCGGCCAGCAGTTACCCAAACCCAAAGACTCCATGCTGGGAGACCGAGGAGAGATTATTGATCCTTTTGTGGAAGTTGAAATAATTGGCCTGCCGATTGACTGCTGCAAGGAACAGACCAGAGTCGTGGACGAcaatgggtttAACCCGATGTGGGAGGAGACGCTGGTCTTCACAGTGCACATGCCGGAGATTGCTCTCGTGCGTTTTCTGGTTTGGGATCACGATCCCATCGGTCAAGATTTCATCGGCCAAAGGACCCTCGCCTTCAACAGCATGATGGCCCGTTGGTGTCGTCCTGCAGGTTACCGTCACGTGTATTTGGAAGGGATGGAGGAGGCGTCTATCTTTGTTCATGTGGCTGTTAATGACATCACTGGTAAGGTACGGGCAGCCAGCGGTATAAAAGGGCTGTTTCACAGAAACCCAAAGCAGTCTTCTCTGGACAGCCATGCTGCTGCGCTGCGCGGCCGTAAACCACCCTTTGGCGCCCACCTGCTTCGCCGTACGGCCAGTGCGCCCACCAAGGGCCAACCCAAAGTCAAGCGCGGCTTCCCCGAGATCTCCATCGACACCAAAGACTGCAGCTCGGAGGGAGCCAGTGAGGAGCGTGAGTCGGAGGAGGGCCCGGCCGCCCACCCTAACGGGAACGCGGCAGCTTCGGCGGCACAACCGTGGGAGCATGGCACCAACGGGCAGCGCAACCCAGACGACAGCAAAGACCATTCCACAGTGCAGAGACCCACTCCTTCTGTGCGCCTCCTGGAATCCATAGCTGAAGAATTTCAGGAGAAAACTCCTTTGACGTCAATGTGCAGTCCAGCCAATACCTCACCACGTTGTTCTGATCACTCCTTAAGTTCGCATCAGCCATCTACAGCAATAACAACGGCTTCAGAGAAGGACAACCATAGCCCTGTACAAACAAATAAGGACCTTTTAGAGCTACCTGTCCCTTCCCAGTGTCTCACACCCAATGTTAGCAGTGGGGAAGACCCCTTTAGCTCTTCCCTTTCCATGAATTACCTTGATATTGGGAGCAATAAGCCCCTTGATTCGGAGCAGGCTGGAGTTGAGCCAGTAAGTCCTGGAAGAAATAAGGTAGAGGATGGCACGAGTGTAGTTGAAAAGACGGGTCTAGCTTTAGAGACAGAGGCTACGGCTGAGACGGCCACAGCTCAGAGGGTGCAGGCACTAAAGGCcttgtttgacagggatgtagGGCGAGGCTCCCAGCCTGGTCCTAGGACCCCCATCCGAAGGACCAAAAGCACCGGGCAGGTGAGAACGGCCAATGAACCATCGGTGGTGCCTGAGGTGATTATCGATGCAACCGTCAATGACCGCCTATGGGTCAAGCTGGATCCTGGCAGCCACAGGGACAGCGTGTCATCCTCCTCCAGCATCTCATCCAACGACACTGTGATCGACCTCTCCTTGCCCAACCTGGCTAGGAAGAGCCTGACATGCCTTCGAGCTGCAGCCAGGGATTGCCCGGAAAGCCAGGCCTCGACAGCTGGTTGGACAGTCCGACCTCGTTCAGCAACAACTATCTGCGTTAGTAAGAGCAAATCCAACCCCAATTTGCGCGATGGGGAGATGTGTGAACCAGCGGACGAAATTCAACCTAGGCCTCTGTCCAGCGAGTGCGATGCTAACCGGCTGATGCAGCGGCGTCACACTTGGAGCAGGCTGTACATTGAGGGCTTGAAGCAGTCATCCACTTCCGCCAAGAGATCAGCAGCTTCTTTACTGGCGAAAGACCCAGACACTGAATCCAAGTCCAAGAGCCTGGGCGACCTCACCTCAGACGACATCGTCTGCAACTTCGACAGCAAGTACCGAAGCATCAGCCGGAGTTTCATTACCAGGCCCACCCGTCAGCAGAGGGCGCAAAAGAAGGAGACCCACGATGACCTGACTGAGCGCTTGAAGCAGTTGACCGATGTCGAGCCCCTGACAAGTAGTGATTTTGAATCTCAGAGGCGCGACTCAGAGGCTGGATCTTATGAGCTGGAGGAAGAAGAGACGCCACCATTGAGGCGGAGCTCCTCACGCAGCCAGAGTCGTGTGAGGTACATCGCCAACCGTGCGAGGCAGGCTCAGGAGAGGCAGCGGCTACAAGGCCTCTTAAGATCTTCTGGAAGCCCAATTGAAGAGCGGGGCATTCCAGAGGGAGCCTGCAGTGTGGCCCGAAGCCCTTGCACTAGTCTGGACCTCCTAAGTCAGCTTCCACCCGGACCACCCCACCAGAGTCCCCTCAGCCCGGACAATGAGGTCTTTTTCATGCTCCGGCTCTGACAGATTGAGAGCTATGCCTGACAGTTGAATTTTGCGGACAATCCAAGAGACTCTTGTGGTAATTCTGGTTTTTGATTTTAGTTCTAGAGACCCCTGTTTATTGGAATATTTTGGTGTTTTCTCTGCTCCTTGCCTGAATCGTCAAATCAGCTCATTCCCAAGCCCTCCCTGACTGACGTGGGATTGGCAGAGCAGCAAAAACACTAAAAGCCAGAGGTTCTACAGGACTAATGTTGAGAACAATTGCATCAGACACTCTCTGTCTGCCATTCTTGCGCTATAAAGTATCCCATTATGAAAAGTGGGCATTTCAATTCATgcatttttgtcttgttttttttgagagagagaaaattatttgaattttcTGGAAACATGCTGTAAGGATCTCATTTGAAGTTGGCTGTGTTGGACATCTCTGTCTTGTACACTCCTACTTCAGCAACACTTCTGCAACAATTTCAGCTTGGCAATatgacatacagtatgtttcctAAATACTCGCACATTCATTTCAGGCTGGGCTTTTGCCAACTGGTAATACACTGAACAGGATGAAGAGTGAGCGATAGCCTACATCACAAAGGTCCAACATACTTAAGGCCGATTAATACTTCTGTATCTAGTCAATGTGGAGTCTACGGAGTAGCCTGTGCCTGTGGCCTATTGTGGTCATTGTGGATGTTTGTACTTGACTGTATGTCAATGTGTCTGTAGACTCAGCAACCTGAAATCTCAACGAATGGTGCCACGCTCCAtactctttaaaaataaaactacaattaataaaataagcaGCGTGGATTACATTGGAGAGCACTTACAGTAAATGAACGTGGAGTTCTTTGACGTTCTTTGTCAGCAACTATCAGAGAGTAATCCAGCTGAGAAAAACATTAAGTTTCATGGCTGGTTTAAGCCTTGTGTAAAACCAGATTAAACACATGCCAAGGCCAGCTGCTCTGTCTGTAACCCTGCTGTTAGCATTTTAGAAGTGTGGGGATGCGGAAATACAGTTCTctgtggaccaatcacagttgcTGGGGAGCTATCACTATGCATAGGATGTGTATAGGCTACACCGCAGATTTGATGCAAAAGCATAAATTGGCCTTGAGTATGGAATACTACAGGTTGTATAAGTTTAAGGTCTGAAAACAACCTGAAAAAAGCATTTGGTGCAAAGTCACATCACAGTAACAAGCTTTCAAGTTTATTatcataaatgtatttgttcttGTTGAAAACTGGAATGTGATTGGAAGTCAAATGTCCTCAATAATGATAACGATGATAACTCATCtaaaattttgtcatttttgctgTAGCAATAGAGAACTAAGACAAAAATGACCATTTGTATGATTCTCATTTCCTTCATTTGAAATGCTTAGACATGTTTACTACTGCGTAATCAAATACCAATGCGTCTGATTGGTGTTGATAATGGtgtacgatttttttttttataacaaaagCATGGAATGTATTTGCTACactaatttatttgtttttgagaTGACCTTTTCAAATGTTTCCTGTTCGTTTTGTCACATTCCTTCCATTATTAGCTGAAATGCACAATAGCAACAGCCATCCGTcctgttttatcttgtttttttgtattcatttaGTCAGGCTTAGGCTTTTAATATGTCAGTGTATGAACTGTATAAAGTATTATCAGCAGGCACATGTACAATAGTtgccccattttttttttttttcagattttcttgCATGTCAGTGATTTAAATCTCATTTAAGTTTTAGTTTACAGTCTCAGCCCCACAGCTTGTTGACTTGTCTCTGGTATGTAACTGTCTTAAGGAATAAGTTAATAAGGAAATATGTTGAAAACCGAGTCCGCTGATACAGAGGCTCTTTGAAGATGCACGACAAGAGGGAAATAAATTTCTACAGAGCACATCTCTCACTTTGTACTGTAATGTTTGCACTGTCCAACCTGGTAACTTTGCAAGAGTCTGAGagaatttttaagtaaaatcttATGTATATAGAGAA

Function

symbol description
plch2 Enables phosphatidylinositol phospholipase C activity. Involved in phosphatidylinositol-mediated signaling. Predicted to be located in plasma membrane.

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase eta-2 isoform X1

GO: NA

KEGG:

id description
K19006 PLCH; phosphatidylinositol phospholipase C, eta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670704.1 True 6930 mRNA 0.50 22 41785640 41903713

Neighbor

gene id symbol gene type direction distance location
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding upstream 332677 41440699 ~ 41452963 (+)
LOC103032860 LOC103032860,LOC108432146 coding upstream 387535 41396141 ~ 41398105 (+)
nppa NA coding upstream 395144 41389619 ~ 41390496 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding upstream 450058 41318725 ~ 41335582 (+)
kiaa2013 kiaa2013,si:dkeyp-104h9.5,LOC107678452,LOC107698843,LOC107595762,LOC107602448 coding upstream 470432 41305310 ~ 41315208 (+)
LOC103035003 LOC108432140 coding downstream 7035 41910748 ~ 41934572 (+)
dpp9 dpp9 coding downstream 44306 41948019 ~ 41977048 (+)
LOC103027292 NA coding downstream 138614 42042327 ~ 42059412 (+)
LOC103027595 NA coding downstream 158585 42062298 ~ 42067929 (+)
LOC103036755 NA coding downstream 172761 42076474 ~ 42077943 (+)
G58096 NA non-coding upstream 22062 41758283 ~ 41763578 (+)
G58074 NA non-coding upstream 94252 41691121 ~ 41691388 (+)
G58054 NA non-coding upstream 206592 41578321 ~ 41579048 (+)
G57987 NA non-coding upstream 488966 41294584 ~ 41296674 (+)
G57972 mfn2,LOC107748965,LOC107710790,LOC107698839,LOC107678429,LOC107602467 non-coding upstream 530201 41252811 ~ 41255439 (+)
G58114 NA non-coding downstream 106333 42010046 ~ 42030054 (+)
G58177 NA non-coding downstream 146428 42050141 ~ 42051109 (+)
G58201 NA non-coding downstream 224477 42128190 ~ 42131034 (+)
LOC111192688 NA non-coding downstream 462419 42366132 ~ 42422813 (+)
G58227 NA non-coding downstream 502484 42406197 ~ 42406592 (+)
G58025 NA other upstream 346729 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 408195 41374689 ~ 41377445 (+)
G57856 tp73 other upstream 1105085 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1695369 39967090 ~ 40090271 (+)
ndufa7 ndufa7 other downstream 132126 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 305008 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 631188 42534901 ~ 42576703 (+)
G58256 ppih other downstream 673479 42577192 ~ 42626114 (+)
G58529 NA other downstream 1757069 43660782 ~ 43661647 (+)

Expression


Co-expression Network