rbsn (rbsn)


Basic Information

Item Value
gene id rbsn
gene name rbsn
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45993058 ~ 46013668 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670756.1
TCACATGACCCACCGTGTGATGAggctgcgctgctgctgctgtcgaGCTGAGTTTCACCTCCTGCAActtcacacactcttacacgcCCCAACACACATTCTCCCATTCCCCGGAGCCGCAGCGGACTGCGAGTGATGGAGAAGGTCTGGAGTGTGTGCTGCCTTCAGTCAGATATGCTATGAGCTTTTGGATATCACCCATTGTGCCATAGTACACCCAGCACATTTGTTCAACCCTTGACCCATGGCCTCTAGTTACCCTCCTCCGTTTGAAGGCTCAGCTGAGGTAAAGGAGGGCTTCCTTTGCCCTCTTTGTCTGAAGGACCTGCAGTCTTTCTATCAGCTGCAGGACCACTATGAGGAGGAGCACTCTGGAGACAGCCACCATGTTGGAGGACAAATAAAGAGTTTAGTGCAGAAGGCAAAGAAGGCCAAAGACAAGCTTCTGAAACGGGATGGAGACGAGAGAACTGAGACCAGCTATGAGTCTTTCTACTGTGGAGGAGTGGACCCCTACATGTGGGAGCCTCAGGAACTGGGAGCCACTCGGAGTCACCTGGATCTTTTTAAGAAACACAGAGCTGCCAGGATTGATCATTATGTCATCGAGGTCAACAAGCGAATCATTAGGTTGGAGAAgCTTACTTCCTTCGACAGAACCAACATGGACGCTGGGAAGATAAGAGcttTGGAGAAGTCAGTGGTGCCGTGGGTGAGTGATCACGATGTACCGTTCTGCCCCGACTGTGGTGGCAAGTTCAACATCAGGAACCGACGCCATCACTGCCGGCTCTGTGGATCCATCATGTGCAGGAAGTGTATGGAATTTGTGCCGCTGCCGCTGGCCTGTAAACTAACCAGCAGCACCCGAGAGGCACTGTTTGTGCCAGGCAGTCCAGGGAAGGGGGGGTCCCCAAGTGCTGGAGGTCCTGCAGCACCACAGCAGCAGCTTCCACGTCGTGGTTCTATCAGCAGCCTATCTTCAGTCAGCTCCGTGCTGGAGGAGAAAGATGAAGACCGCATCCGCTGCTGCCGCCACTGCATGGAAGCTTTGCTCCGTCACCAACACAAGCTGGAGGAGAAAGATCATGTGCCTGACATTGTCAAACTTTACGAGAGACTGAGGATCTGCATGGACAAGGTGGATGAGAAAGCTCCAGAGTACATCCGCATGGCCGAGTCACTCCATGCCGGTGAGATCACCTATAACCTGGAAACTGCTGGTGTTCTTAGGATGGAAGTGCAGAAATACTATGAGCACATTGATGCTCTGAGTAAGAAGATTTTAACACTAGGGATGAAAGATGATGTGCAGCCTCACCAGAGGACACTCCAACTGCAGAGGATGGTGCGCTACTCAGCCACATTGTTTGTACAGGAAAAGCTTCTGGGTCTGATGTCTCTTCCTACAAAGGAGAAATATTTGGAactgaaagagaaaaggaaagtgGAGCAGGAGAAAAGAATCCAGCAGGAGAGACTGGCAGCCCTGGAGTCACAAAAGCGTCATTCTGAAATCGACAAGAACCGTACAACCCTCAACGCTAATGGAGATGCCCTCCGGCCCGCCGGCGGCCCTCGCATGACCAAAGCCGGCGGCTGGTTGCCCTTGTCAGACACTGCCCACTCGCGCAGCCGTGAACTGGACGACCCTCTGCTGCAACAGATTGACAATATCGAGTCGTTCCTGAAACAGGCGAGGGCGGCCAATAGGACGGACGAGATCGCCATGCTTGAGGAGAACCTGCGGCAGCTGCAGGACGAGTTTGACGCCCAGCAGACTAGCAGAGCCATTGAGCTGTCTCAGCAGCTGGCTGATGAGGAGAGCCTGCAACAGAGCCAGATCCAGTACCTCCAGAAAAAGAAGCTGGAGGGTAAAATGCCCATTAGAGCACAAACCTTGGATTTCGGAGAAGTGAGAAATGCAGCAGAACGTACAGAGAAGGAATTCGATTCCAGAGAAAATCTAAATGCAAGCCCAGTGCTTAGTACACTGCTTAAGACTCAGTCAATTAAATCATTCCCACGTTTACCTGGGAATTCGCCACCACTGCAGAGAGATGAGCGCGCACCGACACCCCCTGCTGGAGAGACCCAGAACAGCAGCGGCACTGCTTCTCTAAATCCATTCGATGAGGCAGATTCCACGCCGATTGAGGAAGATCCAACAAACCCATTCAGTGAAGAAATCCAGAAAGAACACAGCCAAGTGTTGAGCACACAAAACAAAGAGTACAACCCTTTTGAGGACGAGGAGGATGAGGAAAAGGAAGGGAATAACAGTGGCTCTGGAAATCCCTTTGAAGATGAAGATGACAATGGTAACGACAACCAAGGTAACCCTTTCAAGACACCTAACAAAACTCTTAACAAGACACCAGCAGCTTCAACCAATCCCTTTGACAATGACCATAATGAAGGCCCAGCAACGGACGACATAATCGAAGAAGAGTTACTCCTGCAGCAGATCGATAACATCCGAGCATACATTTTCGATGCCAAGCTAAGCGGTCGCACCGATGAAGTGGAACTGCTGTCACAAAACCTGAGAGAGCTACAGCGCAccctacagcagcagaagagaaaaacacactgacctcCATCCACCTTTCCTCCTTAGCCTTTCTCCTGATGTACAGTAGTCAGGACACATTTAATGTCCTGAATTGTCTTGCCATTTGTCACAGTTAAAaacagacatacatacatacatacatatatatatacacacacacacacacacacacacacacacactgtgctgggGGTCCACAGTCCAGCAGGTTTGGTGCTGCTCAAAAACACCTATTCAATGTGGACCAGATGTTTCTAAGCAGTAGACTGTGTGACCCTTTAAGACCAGGAGCAGTTTTCATCCCCTGGACTATAGTTCCACTCACTCACAGAATCACAAAGGCATGAACTTCTAACTGGACACTGCTTTCAGATCTTGTTATGTATAAATAAGTGGGGTTGAAACAAGACTTAACAGATAAAACCTGGTGAGAATTACTGATCTGAACAAACTATTATTTCAGGGTTCTTCAAATCCGTTCCTGGAGGgccatatttattcatttctggAGCTTTGTATAGCAAAGAACTTGACAAATTGATATTTATTGCCATACACGGCttaaaattatgtatatatcatatataaggTTCAGAGGTTAAACTAAGGCTGCACAGTTTATTATTTCAGTATCTTCATTGTAATTTAAgcaaaaatcaggattttttcTCAGAAACTCACAAAGGTCCATATCTTAGAATTGATTATATTTACTCCTTAAATACACAGACTGCATTGTTAATTATCATGGCATGTTGGATCATTGGCTCATTTACATGTGGggtagggctgcatgatactAAACAATACAGATATTGCATTATTTGTGTGTACTGCTACATTTTGGATTATGCAGTGTTTTGAATGAAGATTTCCTGTTGAATGGGACATTGTAGGCTTAAGTGTAGGCTTAATCTCGGGAGTGTCTCGGAAACTAGTTCGGAAAATCATTTGCAGATGTGCACAGACAGTTTttcactacaggaaatgttCTGCATAAAAAAGAACTGGCATCTGTGTAGAGAAGGTCAAATTACAGTTTAAGAAACAtgttctgaatcatttataaaacCTATAAAAGTAATGAATAGGTTGTAgcttttaaatgtgatttttttttttttggtgcgtTTACTATGCTCAGATTTACACGGCGTGGCACGCTGACCCTCCTTCACCCTCAGAGAATTTCTATTCGTATTTCAACCTGCGATCTCATTAATTAAGTCTGTGACATGACAAACTGTAAATTACCCAGAAAATGACCATGTGGGCTCACGCCAACATTTTCTGGACTTTTTTTCAAAGAAGCTGTCTGGTAAAGGGTAAACTGATTAGAATGTGTGTTAACATTAGAGCTGTAagatacattttataatatttttatagttattgtagttatagtttttttaagtaaataagaaatagaaaaggCTTCAATTAGTTTgtgaatataaaacaaattaaaaatgcatttcctGCGTGCACCAGCAGACTGAGGACTTTGATCCTCTGACAAAAtgaggctggaggtagagtgacaTACAAGCTGACAGTAAACACATATTAAACTGCTTCTTAACCTGAAAAACATTAGTGCAGCCAAGTGCCAACAAACCGTAGAGAAGCTTAAACTAATTTGGAATTTTCATTGTATTTTACTTCAGGTTATCTAATACTGTTTTCACATATCAGATGTTTTGTCTGTACTAAACGTTTAACACATGCAGCTTCTCTCTGTAGTGAGTTaccgtttgtgtgtgttttgctggaCACTGGCCTTCAAAGACTGGATTTGAAGAACTCTGCATTTCGTTCTTGATTATTTAGTgcttttttaatcttttgatATTGTTTGCTAATCTAATACAAACAGCCTAACACCTTGTGAGCCAAGCCAACAAACATGCCGATTCAAGCACCTTGATTGAAAATCATGCACTTTTAACACAAGGTAACCATTAATGGAGAACTGCTAGCCTTTCACTAAAGCCACATTAGAGTTGACATCAAGTTTTGTTATGgctaattgtttatttaaagaactggACATTCTACTGCTTTTTAGTTTCAGCAGGCTGGGAATTACACTATTGTTACATGTGAGAATTGAGGCTTTCTCTGAAAAAAGAATTAACAAACTTCCTGAAAGATTTTCATACTTTTGTGGTATATGTGTGATACTTCACTCATTGGCAGAAATAAATTACGCACCAGGCAACAGGATGACCTGTACATCACTGAGCTTTTAGTCTTCTTTCACCACTAGCAGGGGTGACTGTGTTATGTAAAAGCTCTTCAGATCACAACAGAGGTTGGGATAGTGTGTCACCCAGCAAATGCAGGATTGACATGTTACCACCAAGCCTTCATACTTAAACCCAATAGTTGTGGGATCCCAAATTTTACCTGTATTTCTCACATAGCAGTCCAGGTTTACCCTCTCAAATTCTGTCAATTAAgaaaaatgtctttgagtgtATGGttgaggcatgtctagcagtcattGATCTCTCTCtgggaggtgcactacccagaAGTAGATGTTGATGTTACTGCATGCTGAGCTTTGCAGCAATCCAGGGCCGTTATATTTTTGACAGTAAGCGTTTAACTAATGACCAGCAggctatttatttataagttactGATTAACACTAGCATGTAAACATGGAAACACAAAGCTGAAGCATGTATGATGACCCTGCATGCAGACCTTATGAGCAGCATAACATCTTTGGTGGAATTAAAGAAAGTGAGTATGTTGGTAAACTAACAGATTCTAAATGCAAACTCTGAACGAAAGCCTTTTTCATGTGTTGGCCTCAGTGTGAAGTTAAACTACAAACTTGTGAAAGTGGTGGAATGTCCCATGTAAACAGTCCCAGCATCATAACACCTGACTTAACATGTTTATGCCACTAAATGCAACTTCTTCTAGCTGTGCATAACTTCTCTACATGGTTATGCTGTACCTTTACAGACTTCTACATTTTTAATGCCATTGTTGGATgtatgctttattattttagctaaaCTTTAGCTACAAAATTGACATTTTATATAACACTAAATCAGTTATGtgctgtttaaaatgttcttacTCTACAAACATTTCACTTTAATTGAAGAGCATAGCTGTTCATTTCATGGTTGTGTTAGGGTTAAGGCTTATGTATCATAAACCAGCAGTATTCCACTACGCAGACAACTGCACAGGATCAAGCGTGGCGCCTTTCTGAAACATGTCTTGATGTCCTTCTAACAAGGAGTAGGCTGAAGTAATGTGTAACCGTCTATGAAGTGTCTGGTGACTGAATAAAATGCCTGTAAACATTTTAGAGCTATCAGAACATaaacactgcactaataaaaaaTGACCAAGTAAGAA

Function

symbol description
rbsn Predicted to enable metal ion binding activity.

NR:

description
PREDICTED: rabenosyn-5

GO: NA

KEGG:

id description
K12481 RBSN, ZFYVE20; rabenosyn-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670756.1 True 5966 mRNA 0.43 12 45993058 46013668

Neighbor

gene id symbol gene type direction distance location
trh NA coding upstream 49600 45940868 ~ 45943458 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 379485 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 386536 45548142 ~ 45606522 (+)
creld1 creld1 coding upstream 458429 45521773 ~ 45534629 (+)
LOC103029982 NA coding upstream 471732 45504091 ~ 45521326 (+)
LOC103044102 LOC108432094 coding downstream 43806 46057474 ~ 46070282 (+)
LOC111192690 LOC108432118 coding downstream 109193 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 392086 46405754 ~ 46423234 (+)
LOC111192740 NA coding downstream 682811 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 814300 46827968 ~ 46851232 (+)
G59094 NA non-coding upstream 84961 45907602 ~ 45908097 (+)
G59093 NA non-coding upstream 86740 45906111 ~ 45906318 (+)
G59091 NA non-coding upstream 91650 45900672 ~ 45901408 (+)
G59089 NA non-coding upstream 95156 45893294 ~ 45897902 (+)
G59088 NA non-coding upstream 101310 45891510 ~ 45891748 (+)
G59101 NA non-coding downstream 9440 46023108 ~ 46034230 (+)
G59127 NA non-coding downstream 31476 46045144 ~ 46046262 (+)
G59135 wdr46 non-coding downstream 59837 46073505 ~ 46103556 (+)
G59133 NA non-coding downstream 76708 46090376 ~ 46136855 (+)
G59131 NA non-coding downstream 78900 46092568 ~ 46093819 (+)
G58971 NA other upstream 202904 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1126220 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1392098 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1409140 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1546555 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 838696 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1609886 47623554 ~ 47661357 (+)
G59782 NA other downstream 2856499 48870167 ~ 48879623 (+)
G59806 NA other downstream 2984492 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 3308610 49322278 ~ 49370251 (+)

Expression


Co-expression Network