LOC111192690 (LOC108432118)


Basic Information

Item Value
gene id LOC111192690
gene name LOC108432118
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46122861 ~ 46186900 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670771.1
TTTCTGCTCAAAGACATGTGTGTCGACGTACCTGTTAACCCCCAGACAATGACTCGGCCTGATCTAATTGAGTTTGAAGGCATCTCCATGGTCCATTACTTCACAGACAACTGGGAGAAGGTTCAGACCTTCCAGGCAAGACCAGATGACATTCTCATCTCCACTTATCCCAAAGCAGgCACGACCTGGGTTTCCTATATTTTGGATCTGCTCTACTTTGGGAACAAGGAACCAGAGCTTCAGACCTCACAGCCAATCTACATGCGCGTACCTTTCCTAGAGATGACCATCCCTCAGCTGCCAACAGgggTGGAGCTGGCAGACAGGTTGTCCACTTCTCCACGACTCATCAAAACTCATCTTCCTGTTCAGTTGATACCAAAGTCTTTCTGGGAACAGAACTGCAGGGTTGTCTATGTAGCTCGTAATGCCAAGGACAACGCCGTGTCTTATTTTCACTTTGAGCGGATGAACTTCATACAGCCTGATCCTGTAGACTGGAACAATTTTCTGCAGATGTTCATGGATGGAAAGAAGGTTTTTGGTCCTTGGTATGATCATGTGTGTGGATACTGGGAGAAGAAGCAGACTATTCACTATATGTTCTTTGAGGACATGGTGGAGGATACTGGACGTGAGGTGGCACGTTTGTGCTCCTTCCTTGGTTTATCTATACCAACAGAAGTCAGAGAGAAAATTACAAAAGATGTTCACTtcgacaacatgaagcagaacACAATGACCAACTACTCCACAATCCCTATTATGGATTTCAAGATCTCACCATTCATGCGAAAAGGGAAAGTCGGGGACTGGAAAAATCATTTCACTGCCACTCAGAACGACCAGTTTGATGAACACTACAAACAGAAGATGAAGAACATCACCCTTCAGCTCAGAACAGAGATTTGATCCCTcatgatttttttgttctttgcatTGTATATATTCATGATATATGGAccaaaatgagttaaaataataaaataaaatcttatgTTGACCTCCACTGAAA
>XM_022670772.1
CGGGCCAAATCCACAAGGGCAAGGGTGGACAGAAAGAGGGGGAggggaaaagagaaaaacagagtaaGGCGACGTAGCTTCAATCttaaaagaaacatatcAAAAACAGAAATTCTTCAGGAAAAGGACACTTTTGCACCAGTCATGGAAGGAATTGATTTGGCTTCGACAATGACTCGGCCTGATCTAATTGAGTTTGAAGGCATCTCCATGGTCCATTACTTCACAGACAACTGGGAGAAGGTTCAGACCTTCCAGGCAAGACCAGATGACATTCTCATCTCCACTTATCCCAAAGCAGgCACGACCTGGGTTTCCTATATTTTGGATCTGCTCTACTTTGGGAACAAGGAACCAGAGCTTCAGACCTCACAGCCAATCTACATGCGCGTACCTTTCCTAGAGATGACCATCCCTCAGCTGCCAACAGgggTGGAGCTGGCAGACAGGTTGTCCACTTCTCCACGACTCATCAAAACTCATCTTCCTGTTCAGTTGATACCAAAGTCTTTCTGGGAACAGAACTGCAGGGTTGTCTATGTAGCTCGTAATGCCAAGGACAACGCCGTGTCTTATTTTCACTTTGAGCGGATGAACTTCATACAGCCTGATCCTGTAGACTGGAACAATTTTCTGCAGATGTTCATGGATGGAAAGAAGGTTTTTGGTCCTTGGTATGATCATGTGTGTGGATACTGGGAGAAGAAGCAGACTATTCACTATATGTTCTTTGAGGACATGGTGGAGGATACTGGACGTGAGGTGGCACGTTTGTGCTCCTTCCTTGGTTTATCTATACCAACAGAAGTCAGAGAGAAAATTACAAAAGATGTTCACTtcgacaacatgaagcagaacACAATGACCAACTACTCCACAATCCCTATTATGGATTTCAAGATCTCACCATTCATGCGAAAAGGGAAAGTCGGGGACTGGAAAAATCATTTCACTGCCACTCAGAACGACCAGTTTGATGAACACTACAAACAGAAGATGAAGAACATCACCCTTCAGCTCAGAACAGAGATTTGATCCCTcatgatttttttgttctttgcatTGTATATATTCATGATATATGGAccaaaatgagttaaaataataaaataaaatcttatgTTGACCTCCA

Function

NR:

description
PREDICTED: cytosolic sulfotransferase 3-like isoform X1

GO:

id name namespace
GO:0008210 estrogen metabolic process biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0006584 catecholamine metabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004304 estrone sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670771.1 False 1015 mRNA 0.43 8 46122861 46186900
XM_022670772.1 True 1132 mRNA 0.43 9 46123124 46186894

Neighbor

gene id symbol gene type direction distance location
LOC103044102 LOC108432094 coding upstream 52579 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 109193 45993058 ~ 46013668 (+)
trh NA coding upstream 179403 45940868 ~ 45943458 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 509288 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 516339 45548142 ~ 45606522 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 218854 46405754 ~ 46423234 (+)
LOC111192740 NA coding downstream 509579 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 641068 46827968 ~ 46851232 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 721382 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 770206 46957106 ~ 46967434 (+)
G59141 NA non-coding upstream 1399 46116727 ~ 46121462 (+)
G59140 wdr46,LOC107690721 non-coding upstream 14434 46106967 ~ 46108427 (+)
G59135 wdr46 non-coding upstream 19305 46073505 ~ 46103556 (+)
G59136 NA non-coding upstream 27879 46094099 ~ 46094982 (+)
G59131 NA non-coding upstream 29042 46092568 ~ 46093819 (+)
LOC111192691 NA non-coding downstream 22841 46209741 ~ 46216357 (+)
G59163 NA non-coding downstream 64799 46251699 ~ 46256811 (+)
G59173 LOC108432102 non-coding downstream 98176 46285076 ~ 46297423 (+)
G59185 LOC108265865 non-coding downstream 131223 46318123 ~ 46329680 (+)
LOC111192692 NA non-coding downstream 138549 46325449 ~ 46330506 (+)
G58971 NA other upstream 332707 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1256023 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1521901 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1538943 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1676358 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 665464 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1436654 47623554 ~ 47661357 (+)
G59782 NA other downstream 2683267 48870167 ~ 48879623 (+)
G59806 NA other downstream 2811260 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 3135378 49322278 ~ 49370251 (+)

Expression


Co-expression Network