LOC103029228


Basic Information

Item Value
gene id LOC103029228
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49272994 ~ 49308775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670831.1
cGCGGTGGGAGGGAGCAGCACAAACTTTCtctcggtgagagagagagcgagagagtttGAGCGCGTGAGCGAGTGTAagttttgagtgtgtgtatgtgcgcgcgcgcgcgtgtggtaaagagaaagagtggtagagagacggtgtgtgtatcagtgtgtaagTCGGAGCTGGATGGTGATGATGACGCGGCGCCGCTCTGCCACGTCTCTCCCCGGTCTCGGGTTGTGGTCAGGCCGGCTGCTGTGCGCGCTGCTGGCCGCGGTGTGGAGCTCCGGGGCCCGGGCCGGGCTGTACTCACCCGGGGACCGGGTGCGGGTGGTGGACGCCGACAGCGTCCCGCAGCTCTTCAACACGTCCTCCGCCTTCCTGCTGGAGCTCTACGCCACCTGGTGCGGCCACTGCGCCGCCTTCGCCCCCGTCTTCAGGAGCCTGGCCAGAGACATCTCCGAGTGGAAGCCGGCGGTGGACCTGGTGGCTATAGACTGTGCTGAGGAAGAGAACAGGAAGGCCTGCACCAGTTTGGGGGTGACTGGGTACCCCTCTCTAAAGttcTTCCCAGCGTATTCCAGTAACGAGTCTGTGGGGGAAAGTCTGAGAGGTTTTCCACGGGATGTCCAAGGCCTTCGTCGCCTTGTTATTGACAGACTGGAGTCCCATAAAGAACCTGGACCACCTGCATGTCCACCACTGGAACCAGCCAGtgctgCAGAGGTTGACGGTTTCTATGAGAGTAATAAGGATCAGCACTTGGCGCTGGTGTTTGAGAAAAATGACTCGTATGTAGGCAGAGAGGTAACACTGGACCTGTTGCAGTATGAGAATATTGCTGTGCGGCGGGTTTTGAGTTCTGAAAAGGACCTGGTCTCCCGACTCGGAGTCACCGAATTTCCCTCCTGTTACCTGTACTACACAGACACCAACTACACCAGACTCCCTGTacTCATGGAGGCTCGAACGTTTTACTCCTACGCCCTCCAGAGGCTGCCGGGTGTAGTGCGGGCAGGAAAACCCCTTCCATCAGACTCTGACCTGCAGAGGAACTACACAGAGGAACCATGGAGGTCCTTCAACAGgtCGCGGGTGTATATGTCTGATCTGGAGTCAGCGCTGCATTACTCTCTGCGAGTGGAGCTTTCTGCTCACACCACCATCAGTGGAGACGATCTGACAGCCCTGAAGCAGTACATCACCGTACTCACCAAGtatttTCCAGGCAGGCCTGCCATTAAAGGTGCTCTGAAGGCTGTGGAGAACTGGCTGCAGGAACAGGAGGGAACTGAAATCCAGTACAGCGACTTCAGAAAAGCTCTGGACAGCACAGTACTGagtgGTGATGCAGTCCTTCCTGCAGGTGTGAGGTGGGTTGGTTGTCAGGGGTCGCAACCTCAATACCGCGGCTATCCCTGTGCCGTCTGGACACTCTTCCACGTACTGACCGTACAGGCTAAAGCTTCAGGAAGTACAGatGGTCTGGAGGTGCTGCGGGCGATGAGGGCGTACGTGAGCAGTTTTTTCGGGTGTCGGCCGTGTGCCACTCATTTCGAAAGCATGGCTCAAGAGAGCCTGAGTGATGTGACCTCTCCAGCCACCGCCGTGCTGTGGCTGTGGTCCCGACACAACCAGGTCAACAACCGCCTGGCAGGAGAGCCGAGTGAGGACCCCCACTTCCCGAAGATCCAGTGGCCGACCCCCGAGCTGTGCCCCAGCTGCCACAGCCTAAAGAACGGTGGAGAGCACAGCTGGAGCAAAGACCAGGTGCTGGACTTCCTCTACAACTATTTCTCCGCTGAGCGCATCCTGCCCGATTACCTGCAGGAGGTGAGCGAGGCCGCGGCCCAGCAGAAGGCGCTGCTTACAGCAGCCCAACAGGAGAGAGACGCCACCCGCAGGAGAGCCAGGGAAGTGCAGGAGGTGCCATCTGCCCTGCCAGCtcaggaggatgaggaggaggtggaggaaGAGGAAGAGGATGAAGCAGCTGTGGCCGCTGAAGAAGAGGAACCAGAGGCTCTGGCTGAAGCAGCTGAGGTTGAAGTTGGAGAACCTCAACAAGTCATCAAAGAACCAGTGGATGAAACCCCGTCTCCAGAGCGTCTGTCCTGGGCCAGAGGACGAGTTCCACGTCGTCACGGGATTGTAAAGATGAAGCTTCGGCAACCTCAAGAAGACATAGTGGACCTGGACTCCTTCATCAACCAGCACTACAAAGCCAAAGCGCTCCGAGCGTTCGCCGTGGTCCGACAGCACCGGCGGGAGGAAGCGGCAGAAGCGGAGGAGCATCCACCGGACAGCGTGAGGAGAGTCAAGAGGGAGCTCGTCTCCAGCAGGAGGCGCTGCTCGTGGAAGCCGTACCCTCCTCCTCAGGGAAAGCGCTGGATGTCTCTGCTCACTGTGGGCTTTTCCAGGCTGGACGTGAGTCTGTGTGTGCTGTTCTACCTGCTGTCCACCCTGTGCCTCTCCGCCATGTACCTGTACTTCAGACTGAAGCGACGCCTCCGCAGGGCGAAGGTGGCACTGCCCTAAAGCTCCTTTGCCTTATTTGCTATACTGGTAATACAGCAGATACAGTGATGTCATTTGAATTTTTTCTGGTAGGGATGCTCTGTTTTAAT

Function

GO:      GO:0044699

KEGG:

id description
K10758 QSOX; thiol oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670831.1 True 2613 mRNA 0.58 14 49272994 49308775

Neighbor

gene id symbol gene type direction distance location
cep350 NA coding upstream 4122 49203268 ~ 49268872 (+)
cacna2d3 cacna2d3 coding upstream 854782 47998093 ~ 48418212 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding upstream 1339383 47927955 ~ 47933611 (+)
il17rb NA coding upstream 1379039 47880396 ~ 47893955 (+)
cacna1d cacna1d coding upstream 1416462 47711376 ~ 47856532 (+)
LOC103028608 xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171 coding downstream 161657 49470432 ~ 49539741 (+)
sin3b sin3b,LOC106613916 coding downstream 239869 49548644 ~ 49568835 (+)
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding downstream 261937 49570712 ~ 49600806 (+)
ndufb11 ndufb11 coding downstream 294016 49602791 ~ 49606898 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding downstream 299824 49608599 ~ 49613480 (+)
G59883 NA non-coding upstream 1011 49239227 ~ 49271983 (+)
G59855 NA non-coding upstream 235949 49036613 ~ 49037045 (+)
G59853 NA non-coding upstream 237189 49032837 ~ 49035805 (+)
G59798 NA non-coding upstream 344188 48928458 ~ 48928806 (+)
G59793 apeh,LOC105013991 non-coding upstream 347560 48922590 ~ 48925434 (+)
G59970 NA non-coding downstream 143747 49452522 ~ 49453328 (+)
G59972 NA non-coding downstream 145654 49454429 ~ 49455103 (+)
G59976 NA non-coding downstream 150674 49459449 ~ 49460506 (+)
G59986 NA non-coding downstream 170310 49479085 ~ 49479357 (+)
G59996 NA non-coding downstream 194742 49503517 ~ 49503723 (+)
G59806 NA other upstream 274523 48998160 ~ 48998471 (+)
G59782 NA other upstream 393371 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 1611637 47623554 ~ 47661357 (+)
G59257 cdk11a,LOC108265382 other upstream 2391103 46852364 ~ 46881891 (+)
G58971 NA other upstream 3482840 45789711 ~ 45790154 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 13503 49322278 ~ 49370251 (+)
G59961 NA other downstream 114741 49423516 ~ 49437613 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 558843 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 1330719 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1967425 51276200 ~ 51286140 (+)

Expression


Co-expression Network