LOC103028292 (def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059)


Basic Information

Item Value
gene id LOC103028292
gene name def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49570712 ~ 49600806 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670834.1
ggagaggagagtgagagagtgtgtgtgtgtgtgtgtgtgtgagcgggcgagtgtgtaagagagtgtgatGTCTCTGCAGTCATGGATTTGCGCTCAGAGCTGCTGAAGTCCATCTGGTACGCTTTCACGGCGCTGGACGTGGAAAAGAGTGGGAAAGTGTCCAAATCCCAGCTGAAGGTTCTGTCCCATAATCTGTATACGGTTTTGGGTATTCCACATGACCCGGCAGCTCTGGAGGAGCATTTCAGAGATGACGATGATGGTCCAGTCTCTAGCCAAGGCTACATGCCCTACCTCAACAAATACATCCTGGATAAGGTGGTGGAGGGGGTGTTTGTGAAGGAGGATGTGGATGAGCTGTGTTGGACTCTAACAGCGAAGAAGAACTACAGGCCAGTGGGAGATAAAGTTCTGCCCCAGAAGGATGCCTTCCGTCTCTGGTGCCTCTTCGTCTTCCTCTCGGAGGATAAATACCCCCTGGTGATGATCCCTGATGAGGTGGAGTATCTGCTGAAGAAGCTGTGCATGGCGATGAGTGTGGAGCTGAACGGGGTGGAGCTGGAGGACTACCTGTCCCAGGATTTAGTGCAGCAGAACGGCTTCACTGTGTGGGTTTTCCTGGAGATGATGAACTCTGGAAAACTGACCAGAGGAATCAGCAAGGAGATCACCAGCATGGCCATCGAGGAGGTGTACCGAGAAATAGTGGGAGACGTGCTGAAAGAGggttaCCTATGGAAGAAGGGTCAGTATCGGAGGAACTGGACAGAGCGCTGGTTCACCATAAAGCCACAGGGTTTGGATTACTACACCAGCGAGGACCGCAAAGATCACAAGGGCAGCATTACTCTGGACTCTAACTGCTGCGTTGAGGTTCTTCCAGACCGGGACGGGAAGAGGTGCATGTTCTGTCTGAAAACTCTCTCAAAGACCTTCGAGCTCAGCGCCTCAGACACCAAACAGAGACAGGAGTGGACGTCAGCGATTCAGACAGCGATCCGTCTGCAGGCGGAGAAGAAGACCTCCCTCCATAAGGATCTAAAGCAGAAGCGCAGGGAGCAGCGGGAGCACCGGGAGCGCAGGAGGGAAGCCAAAGAGCAGGAGCTGCAGCACCTCCGCCACCTGCAGGAGGAGCGGGAGAGGAAGATGGCTGAGCTGGAGCTCCTGAAGGAGGCGCAGCGCCAGGCCCAGATCCTCCtacagcaggaggaggagaggaggaggagacaaCACGAGGAGCTTCAGCAAACCCTGGAGGAACAACTGCGAGAGGCAGAGGAgGCCCGTGCGAGTATGCAGGCTGAGATGGCTCTAAAGGAGGCTGAGGCAGAGCGACAGCGGCGGAGGATCAAAGAGCTGGAGGAGCTTCAGCAGCGGCTGGAGGACGCTCTCCACCAGGAGGTCAAAGCCAGACAGGACGAGGAGGCGTACAGATACACACAGGCCAGACTGctggcggaggaggaggagaagatgaAGGCTCTGATGGCTCtgcaggaggagcaggaggagtgtATCCAGCGAGCGCAGAGGGAGAAGCAGGAGCTGAAGCAGGAGATGGAGGGTAAGAACCGGGCTCTGGATGAGGCGCACCGGCAACTGGAGGAAGTCCGAGCCAACCGTCACCGAGTGGACCAGGACGTGGTGGCTGCCCAGAGGAAGCTCCGGCAGGCCAGCACCAACGTCAAACACTGGAACGTCCAAATGAACCGCTTAATGTCACCCATTGGGCCAGGagAGAAGCGCCCGTCAATAGGTGGTTTCTCCAGCTTCAGGATCCCGGCGCAGAAAGATCCGGCACTGCGGCTCCGGCAGAAAGGCAGCGAGCAGGACGAGGAGAGTAAGGAGAACATGGCTGCAGAAGACGAAGATAATAAACGTCTCTCAAACGGAGACATGGATGTCAACTGATCACGCCAGACTAAAGAAAGCCAAACGTCCAGGTTCTCCACAGACTCGGAGCATGCCAGTCCTGGAACCGGACTGACGGGACTTTTCCCTCACACAAAGGAGCATCTACAGTGCAGCACTGAAATGTTCATCATGTCCAAAACATTATGCAGTTCCTGTGTTCAGGTGTGAACAGAGTGATTCAGAGTGGGTTTGCTGTGAAACAGCAACTTCCAGAGTTCACTTTCCCAGTCAGAATCATGTACAGTGATGGTGAATGGAAGGTCTGAAGCttgaagccccgcccccacataaaattataaaagcgATTTGttataaatacactgcctgatgACTGACGCACTGAATTTCACATATTTCACCACCTAGTTGGGTAATGTGCAGATTATGTTCAAATGTTCATCAACATTCATATTCAAATATGTAATGGTCAAAGATCATTTCATGAACAACACTTTAATTCAGAACTCAGAACTTTTTGTGTGGGCGGAGCTTTACACATGGCTCAGCCAATAatatgtgtgaatgtgcatGCGACTGGTGCTGATGCATGTTAATGATGAGGGATTGCCTGAATTCACTTGTTTCTGTCACTAATCTGTGGTGTTTAGGTCCTTACTATTGAAatcaggagaaatgttgtaaatctgttgaaattctaccttttttaagaaaatgttaaGCAGAAAAAACATATTGGTTAAGAGTATCAGTCTGGAAGCTCTTTcctaacacttaaaataaaaaattcagcacatttttaattattaagtgaaTTGCTATGGCATTATGAAGGATACAATCTTGATATTTTGCAATAcgatctcattattttgagattaagTCATTCTTGAAACATTATTATGAGGTACGTTCTAATTATTTTGATACATCATGGTGAGATTCTTTCTTTATATTtggagatactatctcattactTTTCTATAATTTATGCATTTGGAATGGAACGTTTGAATTAAGGTAATGAATATTGGCCTCACTATTGGTGATCCAAAATTAGCATATTAAATGATGTTCTGACTTATTAGACAGCCCTAAATGTGGCCTTATCAGATGAAGTTGTGCTGTATGGTTTTTTTCACTGTAATAatctttaaatgtgtgttattttgAATAagacaaatattatatattgagAAATGTGTTGACCAAGTTGTGCTACAGTTTTTCACTGTAAGCTGTTTTACAGGTTCAttcatcattttatgttta

Function

symbol description
def6a Acts upstream of or within cell migration involved in gastrulation and convergent extension involved in gastrulation. Predicted to be active in cytoplasm and nucleus. Is expressed in several structures, including female organism; fin; lateral line; post-vent region; and somite border. Orthologous to human DEF6 (DEF6 guanine nucleotide exchange factor).
def6 Predicted to enable guanyl-nucleotide exchange factor activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Located in cytosol and nucleoplasm.

NR:

description
PREDICTED: differentially expressed in FDCP 6 homolog

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670834.1 True 3144 mRNA 0.48 11 49570712 49600806

Neighbor

gene id symbol gene type direction distance location
sin3b sin3b,LOC106613916 coding upstream 1877 49548644 ~ 49568835 (+)
LOC103028608 xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171 coding upstream 30971 49470432 ~ 49539741 (+)
LOC103029228 NA coding upstream 261937 49272994 ~ 49308775 (+)
cep350 NA coding upstream 301840 49203268 ~ 49268872 (+)
cacna2d3 cacna2d3 coding upstream 1152500 47998093 ~ 48418212 (+)
ndufb11 ndufb11 coding downstream 1985 49602791 ~ 49606898 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding downstream 7793 49608599 ~ 49613480 (+)
LOC103027985 LOC108265720 coding downstream 26288 49627094 ~ 49643347 (+)
LOC103028393 bgna,LOC108265721,LOC107665058,LOC107700508,LOC107755294,LOC107757994,LOC107550196 coding downstream 48753 49649559 ~ 49661539 (+)
LOC103028085 LOC103028085,LOC108411637 coding downstream 62000 49662806 ~ 49666402 (+)
G59960 NA non-coding upstream 23731 49544649 ~ 49546981 (+)
G59996 NA non-coding upstream 66989 49503517 ~ 49503723 (+)
G59986 NA non-coding upstream 91355 49479085 ~ 49479357 (+)
G59976 NA non-coding upstream 110206 49459449 ~ 49460506 (+)
G59972 NA non-coding upstream 115609 49454429 ~ 49455103 (+)
G60013 LOC105906375 non-coding downstream 79836 49680642 ~ 49683666 (+)
G60017 NA non-coding downstream 154477 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 338710 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 400103 50000909 ~ 50001120 (+)
G60047 NA non-coding downstream 424683 50025489 ~ 50026007 (+)
G59961 NA other upstream 133099 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 200461 49322278 ~ 49370251 (+)
G59806 NA other upstream 572241 48998160 ~ 48998471 (+)
G59782 NA other upstream 691089 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 1909355 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 266812 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 1038688 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1675394 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1786764 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2164273 51765079 ~ 51826103 (+)

Expression


Co-expression Network