usp11 (usp11)


Basic Information

Item Value
gene id usp11
gene name usp11
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 51631165 ~ 51652373 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670875.1
ACCCCGCCCACTTTCGTGTAAGGAAGTCATCATCAGAATCTCTTCCTTCTTCCTgcgatataataataataatttgcgGTGTTTCTCCGCTGGGTTCTGCTGGATTTTCGCGTCGTATTAAATGAATCATTATGGCCTCGACCTGCAGTGGCGTGGCGACGGAGCCTCCGGGGCTGGAGACCCAGCGGGCGGAGATCGAGACGCTGATGCGGGAAGAGGAGCTGCGGGTCGGGGAGAGCTGGTATCTGGTGGATTGTAGGTGGTTTGAGTTGTGGAAGGAATATGTGAAGACCGGAGACCAGAACTCCCCCTCTTTTCCTGGACAGATTGATAACACTGAACTGTTTGAGAATTTAGAGACCTACCGTCTGAAGGAGAGGCTGGTGGAGAATGAGGACTTTGTCCTGGTTCCAGCAGAAGCCTGGCGGAAACTGCTGTCCTGGTACGGCATGGTTCCTGAGCAGCCCGCCCTGGAGAGAAAGGTTATCGACCTTCCCAGCACTGTCAAAGTTGAGATCTACCCTGTGGAAATCTTCCTCTGTCTCCATAGCAACATGGAAGAGGTTGTGACAGAGCAGTTTAGCCGAACAGACACCATATATACTATTCAGAAGGTGATGCAGAAGCAGTTTGAGGTAGAGGAGGATGCAGAACCCAGATTGTGGATGAAGAGTTCGGACACCAGCTGTGAGAGGTTACGAAACACCCAAATGACTGTACTGGACACCTGCCTGGCGACCGGCATGACGGTGATAATGGAGTTGAGGAATGCTGATGGCACCTGGCCCAGTTCCAGACCCCAGATCATGAGGAATTCTGTTGAAGAGCAGGACACGTATCGAGGGCAGCCTGGAGTGTGTGGTCTCACTAACCTCGGCAACACCTGCTTCATGAACTCTGCACTGCAGTGTCTGAGCAACACGCCGCCCCTGACTGAGTATTTCCTGAAGAATTTGTTTCTGGGTGAATTGAACTTCACCAATCCTCTGGGCATGAAGGGCGAGATTGCAGAGGCCTATGCAGACGTCATCAAGCAGATGTGGTCAGGCAGGCACTACTCAGTGGTCCCTCGTATATTTAAGACGAAGGTGGGCCATTTTGCCTCCCAGTTTCTGGGCTACCAGCAGCACGACTCCCAGGAGCTTCTGTCCTTTCTGCTGGACGGCCTACATGAGGACCTTAACCGAGTCAAGAACAAAGAGTATATTGAGCTCAGGGACGCCGACGGAAGACCAGACCAGGAAGTGGCAGAGGAGGCGTGGCGTAACCACAGGCGACGGAATGACTCTGTGATCGTGGACACTTTCCATGGGCTGTTCAAGTCCACGCTGGTCTGTCCAGAGTGCCAAAAAGTGTCGGTGACTTTTGACCCTTTCTGCTACCTGAGTGTACCCCTGCCCATCAGCAAGGAGAGGGTGATGGAGGTGTTCTTCGTTTCCCTCGACCCTCTGTCCAAACCTGTGCAGCATAGAGTGGTTGTCCCTAAAGCTGGAAAAGTGATTGATTTGTGCACTGCCCTGTCTCAAGCAACAAACATCCCCGCGAGTCAGATGGTTGTGGCGGATGTGTTTAACCATCGCTTCTACAAGATCTACCAGGTTGATGAGTCTCTGAGCTGCATACTGGACAGAGATGACATCTTTGTGTATGAGCTGAGCAGTAGCTGTGTggatgaggaggaagaggaggtgcTGCTGGCCGTCTACATGCGCGAACGCTCCCACTACAGAGACTACGGCTCGGGGGGCAGCAACTACAGCACGTCGCTGTTCGGCCACCCTCTGCTCATGGCACTGCCACAGTCTCAGTGCACAAGAGATGCCCTGTACCAGGTCTTCCTGCAGCGACTGGCGCGGTACGTTCGTCAGCCAGACCCAGCAGAGGAagtggaagaagaagaggaagaggaggaaaatGGTGAAGACAATGATGAAGAGGAGGAATTATACAGGAATCAGCCCAATGGAGTTAGTGGAGATGATATTGAGGAAGATTCCGAGACAGCAGGACCCTCCAATAGAGTAGAGCAGCCTCAGGAGAACACTCATGATGTTACAGAAGACTCAGAGGAAGCTGGAACCTCCAATAGAGTAGAGCAGCCTCAGGAGAACACTCATGATGTTACAGAAGACTCAGAGGAAGCTGGAACCTCCAATAGAGTAGAGCAGCCTCAGGAGAACACTCATGATGTTACAGAAGACTCAGAGGAAGCTGGAACCTCCAATACAGTAGAGCAGTCTCAGGAGAACACTCACGGTGATGAACAGAACAACGCCCAATCAGAACCTGGCTCGAACGGTGCAGAAGAGGAGAAGACAGAGGAGGAAGAGTCGAGTAGTGAACAGGACCGGGGCAGCAGCACAGAGGAGGGCCAGTCGGCCGGCGGCAGCACGGACACAAACTCCCAGGATGCTGCAGACGGGGAGCAAGGTGCAGCAGAGGCTTCTgggaaagaggaagaggaggatgaggaagagaaAGATGATGCTGAGCCCATTGCTCAGGTGAATAAGAAGGCTGTGAACAGGCGGCGCTGTGCAGAGAAGAAGCAGAAGCCGCTTTTCATTATTCAAGCCGTGAATTCCAATGGCACCACGGAGCGAGGGATGGCAGACGGAGGGaacactctttctctcagctCACCCCTGTATGTGGCCATCGACTGGGATCCTGACATGAAGAAGAAATACTACAatgagagtgaggcagagAGGTACGACAAAGACCAAAGCATGAAGGTCCCTCAGCAGCACACCACAGTGCAGCTGCAGGAGTGCATCGAGCTCTTCACCACAGTGGAGACGCTGGAGGAGGAAAACCCCTGGTATTGCCCGACGTGTAAGAAGCACCAGCTGGCCACTAAGAAGCTGGACTTGTGGTCTCTTCCTGAAGTCTTAATCATCCACTTGAAACGTTTCTCCTACACCAAGTACTCTCGCGAGAAACTGGACTCTATCGTCGAATTCCCTTTACGGTGTCTGGATTTCTCGGGCTGCCTCCTGAGGAAAACAGGGACTGACTCTGAACCTCCCAGCAGATACGACCTGATCGCTGTGTCAAACCACTATGGTGGCCTCCGAGACGGACACTACACCAGCTATGCTCAGAACAAGGACAACGGACGATGGTATTATTTTGACGATAGCAAGGTGACCTGTGCAAAGGAGGAACAAATTGTGaccaACGCTGCCTATCTTCTGTTCTACCAGCGGCAAGACAAGATCCGCTATCCGACGCTTCCTCCACCGGATAATCACATCGCTTCCTCCAATCACGACAGCGTCCCCGGACCCATGGACATAGACTGAGACAGTCCCACTCTgctgtttgttgtgttttattttgtttccttgCCTTCCTGCCGTCTCTCCCTCTGTAGTTGTGATCTCTCCCACTCTCAGGTTAATCAGGGAGGTGTTTTTGTTTGGTTa

Function

symbol description
usp11 Predicted to enable thiol-dependent deubiquitinase. Predicted to act upstream of or within protein deubiquitination and ubiquitin-dependent protein catabolic process. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human USP11 (ubiquitin specific peptidase 11).

NR:

description
ubiquitin carboxyl-terminal hydrolase 11

GO: NA

KEGG:

id description
K11835 USP4_11, UBP12; ubiquitin carboxyl-terminal hydrolase 4/11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670875.1 True 3431 mRNA 0.52 21 51631165 51652373

Neighbor

gene id symbol gene type direction distance location
LOC103034344 NA coding upstream 3573 51619215 ~ 51627592 (+)
LOC103045634 grip2a,LOC108441105,LOC107751584,LOC107714565 coding upstream 96149 51479421 ~ 51535016 (+)
LOC103032126 lhpl4,lhfpl4b,LOC103032126,LOC108440531,LOC107584928,LOC107727430,LOC107674308,LOC108265076,LOC105898894 coding upstream 214015 51410594 ~ 51417150 (+)
LOC103031807 LOC103031807,LOC108440550 coding upstream 250715 51372895 ~ 51380450 (+)
cdk20 cdk20,LOC107727427 coding upstream 264450 51355943 ~ 51366715 (+)
uxt uxt,LOC107734525,LOC107601756,LOC107743136,LOC107674348,LOC107653408 coding downstream 11595 51663968 ~ 51669246 (+)
elk1 elk1,LOC106512270 coding downstream 24036 51676409 ~ 51708703 (+)
LOC103034896 si:ch211-180f4.1,LOC108441099,LOC108265014,LOC107674375,LOC107584888,LOC107601766,LOC107743097 coding downstream 80634 51733007 ~ 51757900 (+)
slc35a2 slc35a2,LOC107674336,LOC107584890 coding downstream 184005 51836378 ~ 51850614 (+)
bcap31 bcap31,LOC107653425,LOC107601763,LOC107674338 coding downstream 199651 51852024 ~ 51886071 (+)
G60506 NA non-coding upstream 26396 51540368 ~ 51604769 (+)
G60512 NA non-coding upstream 77652 51553102 ~ 51553513 (+)
G60505 NA non-coding upstream 103703 51523602 ~ 51527462 (+)
LOC111192704 NA non-coding upstream 152029 51474637 ~ 51479136 (+)
G60489 LOC108413501 non-coding upstream 205725 51421158 ~ 51425440 (+)
G60536 NA non-coding downstream 60827 51713200 ~ 51714184 (+)
LOC111192743 NA non-coding downstream 64675 51717048 ~ 51717756 (+)
G60634 NA non-coding downstream 71360 51723733 ~ 51723998 (+)
G60645 NA non-coding downstream 169213 51821586 ~ 51834142 (+)
G60649 NA non-coding downstream 197285 51849658 ~ 51850183 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other upstream 221903 51387570 ~ 51409262 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other upstream 345025 51276200 ~ 51286140 (+)
LOC103045694 NA other upstream 978259 50639494 ~ 50652906 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 1640748 49867618 ~ 49990417 (+)
G59961 NA other upstream 2193552 49423516 ~ 49437613 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 112706 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 175981 51828354 ~ 51832271 (+)

Expression


Co-expression Network