LOC103044927 (LOC108430355)


Basic Information

Item Value
gene id LOC103044927
gene name LOC108430355
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27188394 ~ 27206043 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670902.1
ATGGCAGATGGCCAGCATTATCCACTGCTGGGCATTCCTACATCTAAAAAGGACGCGCTGCTCTTGGGCCAGAGGCACATTCCTCTTCCACATTCTCTTACAGTGTATTCTCATTCTGCAGATACCTCTCAGCCAAGCAGTGGAAAAAGCCCTGGAGGAGCTGCGAAGGAAGATGATGGGATGATTTCTGTGAAGGTCCAAGGAGCGGGGGTGGATGCTTTTGATTTGCagGTTAATGGCTTCTGGCTGGTCCAGGATGCAGTAATGACCATTCTAGGAAGAGAGGAGGTGGCCCCCCGCACAtccctcgctctgtctctttcagGTGTAACCCTGGACCCCTTCATGGAGCTCCAGAGCATCAAGGGCTTTAAAGCAGGTGTCACCCTCCGACTAGTAGAAGagCCGTACTCTCCACGGTCAGCTCGAGCTCATTTGGCCCACGTTCAGGAGCTGCTGAGAGCTGCCGGCCCCCAAGATGCTCTGAGAGAGGGCAGATCACCCAGCGTCCTcagtacactcacacacacacctgaGCTCCCTTCTGCTGGTCATTCTGCCAAAGGCAAAAAATCTAACAGTAAGACTGAGCAACAACAGACCGAAGCACCTCCACCTCCTGACTACATCCTGCCTGGTGCTTCAGAGCGCCCCCCTCTGGCCACCCTGCTGCCCACCAGCACGTACACTGAAGCTCCCAACTGCCTATTGGACCTGTCACTCAGCTGTTGGAACCCTCCCCCTGGTTCAAGAAAACTGCAAGGTGACTTCTTGTACATCAGTGTCCACACTATGGAGGGGAAGCACTATGACATCACATCCTCTCCACGAGGATTCTATCTCAACAGGTCCACCCTGGATGTGTTTGACCCTCGTCCCTCCTCATCCACTCCTGTATGTCACTGCCTGACTGATCTACTGTCTCAGCTGAGCCCACAATTTAAACACAACTTCAGTACACTGCGTCACAGACCCGCTCTGCCTACAGAAGAGTCCATGTCCACTCCTTACCGTACACTGGGCTGGCTGGGAGGTTCTTCTCTTCATTCTCACAAACCTGACTACAGCTGCAGACTGGGCCTGGAGCAGGGCCTTAATGCACAGGCCCCAGACTGGAATGAAGAACTTCAAGCAGCCAGAGACCTACCACAAACTACATTAGAAGAGAGACTCCAAAGAGACAAAGCCTTACTACAGgtAAATAGTGCCTTTGTATGGGCTGTAGCCCAGGGTGCTGAAAAAGTCATTGATGGCTTTGTTGACCCAATCAACAACTGCAGTGAAGACCCTGCCTTTCTCTGGGGAGGCTTATTCATGAGTATGGGTGGGCCGGGGCAGGAGTGGCTGGGTGGCGAGCGTGGTCGCAGAGCAGCACAGAGACTTGAACTCCAAGCTATTCAGTTGTACAGTGATCTAGAGGGAGACTTGCAGGCTCTCCACACTTTGCCCACTGCCCTGGCTGACTACAGAGGTCTTCGGGTTTCAGTTCAGGGTCTGGCCCCTGGCCTGCAGGGTCCTGACCAGCCTGGAGCCCCCAGGGGTCTCCTGTATGGTGTTAATGCTGGGCCACAGGAGAACCCGGCTCGAAGGAAACTGCTGGAGCTTCTGGCCCAGTCAGCCAAGGCCCTTGCTCTGCAGAGACACGCTGTCGTGGGGCCCAATGGCTACCAGGTGCCCCTCTTCACTTCCACAGACGCTCAGGGGCTGCTGGGTGCGGATGGTCGCTATTACGTAATGGATGTGTTCCGAACAATGCCTGCTGATGCTAATTTCCACAtagtggaggaggaagaggctGGAGCGGATGGTCCTAAACGGTTCCCCCATGGTCTGTGTCGCCTCCGGCCAGAGCTAGTCAAGGCTTTCATCCAACACAAGCACTCTGAGTTCACAACGCGTGTGAGAGAACTGATGGAGGAGaatggaggagtggaggagtgtgTCAAATCTGGTGATTCTCGAGGGACAGAAGCAGTGAGGGGGGCTTGTAAAGATGTTGGCTCCGTCAGTGATATCATCTTTGAGATGCGTTTCAACCCCAACATCTTCTCTCCAGGTGTGCAGTTTTCCAGTTCAGAGAGTCCTGCAGTGTCTTTACAAGAAAGATTACTGAAAGAGGCTGCCACATTCATCACCAACGATCAGATACCTGCATTTGTGAATGACTGCCTGCAAGGCTCTGATACACCAATAGATGGAGCTACACTACGAAATGCCCTCCATCAAAAAGGCATAAACCTCCGCTATTTGGGTCACCTGGTAtccaccatcagccaatcagaacataAGGACCGGCTGAGGCACATCACgAGACTGGCATATGGAGAGATTGTTGTCCGATGTGCTCGAAGAATCTTCAGTGGCTACATACAGGGTGTGGACTTGGCCAGCCTATCTGCAGCTGCAAGTCACTTTCTCTGCTGCTTATTGGTACCACACTACAGTTCTGCCTCAAATGGGGAGGAGTCTAAGAAGCGCTCCAGGAGGCGGGGCCATAAAGGAGGAGGAGCTGCGGACAGTATAGCATGGGGAATGCTCACAGGGAATGAACTTTGGAGTCTTATTTGCCAGGACGCTCAAGAGACCTATGGCCTTAAACAAGGACTTGGGTCGAATGTTGACCATCTGGTTGAGCAATATGGGCTTCAGAAACTGTCCTTATTACGAGAGATGTGCCTCAAGACTGGCATACAGCTCCGGCTCAGAGACTATGCCCTTGACAACCGCAACAAAGCCCCAATCACTCCAGACGACTTGCTCAATCTCCTGCCTGTGGTCAAGCACATCACGATGGCAACAAGTGATGCCTCACGAACATTCCAGGCAGCCCAGAACAGCCTTCagaaagGATTGCTGGAGCAGGCGTACGACCAGCTGAAAGAGGCGGCGTACCTGTTTGGCCGTGTGTGTGACGATCTTCACCCTGAGGCCTGTAGTTGTCTCAGTATGCTGGCTAGAGTGGCCTATCTGCAGGGCCACCATGCTGAGGCTCGCAGTGTGCAGTTGAGGGTCGTGGTCATTAGTGAGAGGGTCCTTGGATTCGACCACCCAAATACCATTCAACAATATGCTTTGTTGGCAGTCTACATGTTCGCTGGAGGAGAGACTGCTTTGGCATTGCGTTGTTTGTACCGAGCTAAATTGCTCATGCTGTTGGTACATGGCGAGGATCACCCCTATACAGCAGTGCTGGATACGTCTCTGGGCCTGGTGCTGCAAGGGGAACAGTCACTGCAGTATCTACAGAACGCACTGAAACTGAACATCTCATTCAGAGGTGCTACAGACCTCACAACTGCCCTAAATCACCATCTACTGGCTCAGAGAATGTGTGTGGCAGGAGATTACCGGGGAGGCATGACTCAAGAGAAGGAGGCCCACAACATCTTTCAGAGCCAGTGTGGTGAGAATCATCCCCAAACCAAATGCAGTTCCGACTTCCTGAAATCCATCACTCAGCAGGCAGTGCGTGTGGAACGATCCATACGACAGGGTGGGGTGGATCCCACTGACCCGAGCACACATGAGAGCTTGGTTCCCTCACTGGAGACTAGACTGGAGCAGCTGGCTCTGGTAAACGGCATCCTGAAGACATCATACAGTATGAGGCTTATGGAATTCAAAGAGAAGCTGAAAGAAAGAAGAGCTGCTGAGGAGGCTGAGAAGACTAAATCAGAATCCTCAAATGAGGCTGAGGCTGTTGAGGAAGCCGCAGACTGTGTGAAGCAAACTGAAGAAGTGAGTGTCACAAACAACGAGACTCAGCCAGAAGATTCAGACATTCTGGAAAAGGAAACCGATCACTCGAAAACGAACGGCCAGGTTGAGTCTCACCTGCAAAATGGAGATGCTGTAAATGAAAATGATGAAGCAGAAAATCCAGCTGTTCAACTGGAAACCAGCGAGAGTATCCCAACGAAGAGCCAGACAGAGCCAAAAGAGCTTATTAATGCAGCAAACGAAAACTTACAGCCAGCTTTAGTAAATGGAGGAGAGGGCATGATTGCTAAAGAGGTAGTAACGCCTGTGGAGAAACAGGCTGCGACAGAAACTCCAGAAACagtaaataactgaaaaaatgtCCGCAACCACAGAGATTACATACATCCATTACACAGTTATGAAACACAATAATGAAACACTTCCACAAAATCCATATAAGTAGAGCAGGGCATCTATCACATGACCATCTAACTGAACAGGGTATATGAATTCTGTctgttgattttgaaaacaCGATAATAAGCACATGACAGAAGCACAAAAGGCTCCAATAAAACTCTGtgagctttttattttatgtatctgtctgtacacgtttgtttgttatttgtcaCACTGTATTCATTCctttacaataaaacaatactCTTTTGGTATTTTTTCTTGCACTGAA

Function

NR:

description
PREDICTED: clustered mitochondria protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670902.1 True 4396 mRNA 0.51 26 27188394 27206043

Neighbor

gene id symbol gene type direction distance location
dhx37 dhx37 coding upstream 7152 27164267 ~ 27181242 (+)
gp1bb gp1bb coding upstream 27828 27155544 ~ 27160566 (+)
sept5 sept5,LOC107713038,LOC102226618 coding upstream 46778 27120811 ~ 27141616 (+)
LOC103046559 LOC108430351,LOC103046559,LOC108265487,LOC105014311 coding upstream 69694 27076367 ~ 27118700 (+)
cdc45 cdc45,LOC107699634,LOC107670985 coding upstream 129052 27050304 ~ 27059342 (+)
cux2 cux2 coding downstream 53839 27259882 ~ 27457190 (+)
mtmr3 mtmr3 coding downstream 273376 27479419 ~ 27504808 (+)
LOC103042580 NA coding downstream 464017 27670060 ~ 27679690 (+)
LOC111192709 NA coding downstream 483669 27689712 ~ 27708708 (+)
LOC111192710 NA coding downstream 502672 27708715 ~ 27717784 (+)
G54735 NA non-coding upstream 30746 27156946 ~ 27157648 (+)
G54693 ufd1l,LOC106585051,LOC106580431 non-coding upstream 139311 27046146 ~ 27049083 (+)
G54686 es1,LOC108430344,LOC107553036,LOC107671040,LOC107552194,LOC107714552 non-coding upstream 168200 27019061 ~ 27020194 (+)
G54683 NA non-coding upstream 217512 26969363 ~ 26970882 (+)
G54680 NA non-coding upstream 241519 26945812 ~ 26946875 (+)
G54747 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007 non-coding downstream 20407 27226450 ~ 27236132 (+)
LOC111192651 NA non-coding downstream 511932 27717975 ~ 27719836 (+)
G54929 NA non-coding downstream 565481 27771524 ~ 27802691 (+)
G54938 NA non-coding downstream 582954 27788997 ~ 27796308 (+)
G54941 NA non-coding downstream 624064 27830107 ~ 27830766 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 153456 27032835 ~ 27034938 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other upstream 165503 27020244 ~ 27022891 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other upstream 215368 26962892 ~ 26973026 (+)
LOC103040153 cdc14b,LOC108265480 other upstream 636824 26537052 ~ 26551570 (+)
srp19 srp19 other upstream 1638900 25545992 ~ 25549494 (+)
LOC103030972 LOC108430356 other downstream 5259 27211302 ~ 27222867 (+)
LOC107197454 NA other downstream 457739 27663782 ~ 27668662 (+)
G54841 NA other downstream 497729 27703772 ~ 27712578 (+)
ipo11 ipo11 other downstream 608172 27814215 ~ 27938389 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 1440021 28646064 ~ 28656818 (+)

Expression


Co-expression Network