LOC111192715


Basic Information

Item Value
gene id LOC111192715
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32713549 ~ 32729908 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670917.1
TGTGACAAAgTTACTACCGCCTGCTCCAAATGCACTCTGTACTCATACTGTAAAGGTGAGGGGGACAGTGCTGTGTGTGAATGTCTTCCTGGCTTTAAGAAGATTGGACAGATCTGCACAGGCATCTGTTCACCAAACACATGTGATGTAAACGCTGAGTGTTCGTACGTTGGTGCGGGACAGTTTCAGTGCAAGTGTAAAGAAGGGTACGAGGGGAATGGCAAATCCTGCACCCCCATCAACCGCTGCTCTCAGAATAACGGCGGCTGCCCTGCTAACTCTACAGTGTGTCAGTATGCAGGCCCAGGCAAGgctaaatgtgtgtgtataagtggaATGGAAGGATCCAACCCTGCTGCTGGCTGCACTCTAAAATCTGCCTGCACCATGAACACATGCCACAGGAATGCTCGATGTGAAACCGGCCAAGACGGAATAGCCAGgtgCCAGTGCAGTCGTCAGCAGATAAGGGATGGGAAGCGGTGCTATGGTACCATCATGGAGCGGGTTCTGGAGCTGGACAGAGAGGGCAGCCAGGCTGGGAAGCTCACAGGAACTGTGGGACTCTTCGAAAAAGGCTGTGAGCTGGTTCTGAGAAAGCACGGCCCATTTACAGCCCTTGTTCCGGCGGATACGTCACAAATATCCGCGCACAAGCTTAACCACCAGCCCACAGCTGGAGCCATATGTAAACATCACCTCATCCTCGGCCAGCACCTTTACAATGACCTGGAGGGCCGAGACTTCTGGACTTATGGAGGAGAAGAGATCAGATTTAAGACAAATAAGCAATTCATCTCAAAGAAGGATCCGGACACTCTGTATACGATTATTCAGACTGATATCCCTGCGGCCAATGGAATTATACACATCATCAACAAGGCATTAACATTAGCAAATATAGACACATCCAGCAGCACTGAGTTTTCTTCCAAGACCATTCGAGAAATCATCACAGAAGATGGCCGATTCAATCGATTTCTCTCACTGGTAGACAACTGTGGAGCTCCCATGCCGCTCACAGGTCCAGGGCCTCTGACAGTTTTCATCCCGACCAATAAAGCAGTGGACCGGTTCCGAGACGGCAGTCTGATATACATGCTCACTGatGCCAGGCACAAACTCCAGGAGCTCCTCCGCCACCACATGTTCTCCCAGGCAGCCGTCACTGTGGACCAGGTGGCCAGTATGAGTGAGATTCAGACCATGGCCCGTCAGGTCATAACTATCAACGCTACTGGTGATGGAAGAGTGCTTCTTGGGGAAAAAGGTATTCCTCTTGTATCGAAGGACATAATCGCATCCAACGGAATCATCCACCTGATTGATGGAGTTCTGGTGCCGCCCTCCATCATGCCAATCATGCCACATCGGTGTGACGTGAACATAAGCACCATCGTCATGAGCCCCTGTGTGACATGCATTCACATTTCTGAGACACACTGTCCACCAGGAAGCGTTGAATTgCCTGAGTTTGCTGAGGACTGTGTGCCCCCTCGTGATCCAAGGATGACAGATTTCCTGATAGTACCGGGCTGTGCCAAATACTGCAACATTACACGAACAAGGGCAGAGTGCTGTAGGGGTTCTATGGGCCGGACTGTAAACCCTGCATCGGAGGTTCCAGAACCCGTGTTACAACAAGGGGACTGTGAGTAG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670917.1 True 1659 mRNA 0.51 16 32713549 32729908

Neighbor

gene id symbol gene type direction distance location
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding upstream 273538 32417679 ~ 32440011 (+)
LOC103025291 NA coding upstream 462540 32244560 ~ 32251009 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding upstream 470990 32221177 ~ 32242559 (+)
nudt18 NA coding upstream 688931 32020346 ~ 32024618 (+)
LOC103029092 NA coding upstream 803738 31905217 ~ 31909811 (+)
LOC103026160 NA coding downstream 598878 33328786 ~ 33360143 (+)
LOC103024594 NA coding downstream 646111 33376019 ~ 33378613 (+)
gck gck,LOC107550933 coding downstream 773707 33503615 ~ 33509374 (+)
LOC103039216 LOC108440668 coding downstream 781603 33511511 ~ 33520503 (+)
LOC103038175 dusp2,LOC108440670 coding downstream 889406 33619314 ~ 33624752 (+)
LOC111192670 NA non-coding upstream 6 32710963 ~ 32713543 (+)
G55995 NA non-coding upstream 220129 32489901 ~ 32493420 (+)
G55979 ncor2,LOC108412761 non-coding upstream 243339 32449498 ~ 32470210 (+)
G55988 ncor2 non-coding upstream 247109 32463588 ~ 32466440 (+)
G55978 NA non-coding upstream 264760 32447672 ~ 32448789 (+)
G56040 NA non-coding downstream 85100 32815008 ~ 32815843 (+)
G56075 NA non-coding downstream 420010 33149918 ~ 33177607 (+)
G56147 NA non-coding downstream 490618 33220526 ~ 33226416 (+)
G56159 NA non-coding downstream 619307 33349215 ~ 33349630 (+)
G56201 NA non-coding downstream 732502 33462410 ~ 33466117 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 496138 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 562979 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 736130 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 789454 31920820 ~ 31924095 (+)
G55532 cgnl1 other upstream 2163488 30528862 ~ 30550061 (+)
G56160 NA other downstream 628306 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 674666 33404574 ~ 33406650 (+)
izumo1 NA other downstream 834920 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 905244 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 1773206 34503114 ~ 34511684 (+)

Expression


Co-expression Network