LOC103047788


Basic Information

Item Value
gene id LOC103047788
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37808548 ~ 37842410 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670928.1
CTCcgtcctgctctctctctctctcttcactcatCATGTGGTTCCTGTTTATATACTTACTGATAGCAGGTGTTCAAGCTCAACCAGAGAGGACCAGGACAGTGTTGCGGGGAACCGATAGTCCATGCAGGGGCCGTTTGGAGATTTACTATAACGGCGAGTGGGGCACGGTGTGCCACCATCAGTGGAACGCCAACGCAAACGGTTTGGTAGTGTGCAAATCTCTTGGCTGTGGTGAACACATGAACTCCAACTACCTCAACAACCTCCCCATAATCAACGTCCAAGACTTCCCCCCGCCCAGCACCATGTGGATGGACGAGGTGGAGTGCAACGGATCAGAGAGCAGCATATGGGACTGCAAAGCCAAGAAGAAGTCGAAATTTCCCGAGTGCAACAGAGAGCGTGACTACATAGTGGTGGAATGCGCAGGGAAAATCAGTTTGTCTCTGAACACGATTGGATATACGGATGAGTGTGCCGGAGTTGTCCAGTTCAACACCCCAGACGGTACAGTCAGCGTGTGCAACGATAACTGGAATGAAGCCACAGCAGATATGGTGTGTGAAGAGCTGGATTGTGGGAAACATCACAAGATCCCAAAACCAGGAACCTTCCAGGGAAAGCCGAGAACCTACACCCCCCCTCTCAGCTGCATCGGAAACAAAATGTTGTCGTGGCAGTGTGTGGACTGGGTCAACAGGAAGTCCAACGACTGCCAACGAGAGGCCAGCGTCATCTGCTCCAAACACAAAAGAATGCGGCTTTCTGGAGGAGAAGATCTCTGCAGTGGAGTTCTGAAGGAGAAGAACACCACAGGGGCTTGGAATCCTGTACCGTTCAAAGCTGATATCAGAAACATGGCTGACGACATTTGCTTAATTCTGAGGTGTGGTAAATCCACTCACATAAGCAAAAGCAGTAACTCCACTAAAACCTTCCTCAAATGCACAGACCGTGTAAAGGTGGAGTTATCAAACAAGTGTTTTGGGGATCTCTACGTGAAAGTGAATACGACTCAAAAGTTGGTGTGCAGTGGTGATTTAACTGAGACCGAGCAGAAGAAGATTGGGACTGTGGTCTGTAAGCAGCTGGGTTGTGGGAAACTACTCGAAATCTCGACGGGAAAGACGACCTCAAAAGGTGAACAGCTGTGCCAGGTGGACTGCACTGGTGAGGAAGACTCACTGTGGGATTGTCTCAAACATCAACCAACTGGAGGCTGCAGATCCTCCAAGTTGTATGTGCAGGTATCCTTGGAGGAGGTGCAGCTGCAGGACGGTTACAGTAACTGCTCAGGACGACTCGAGGTGAAGTTGGAGGGTTCGTGGTGGAGAGTACGTTCATCTTACTGGACAAACAACAGTTCAGACGTCGTGTGCAAACAGCTTGGCTGTGGGGGGTTCCAGAGATGGGAAAATAATGTTTTCGTGCGAAAGTGCAAATCATTCCTGAAGTGGAAACTGAAGTGCGATAAAGACGTCAACGACCTCTCTCAGTGCCTTGGAGACCAGTGGGAATTAGCTCCAAAAACAGACGAGAGATCTGTTAATATTgtttgtgaaaGAAATAAGTTTTATGGTCTGCAGGGCGACCGTCCGTGTGAGGGGACGGCGTTCGAGGTATCTGGAGGGAAAAACGTCATTTTAACTTTAGAAGAAGACAAGTGGAACGACGTGGCCAACGATATCTGCAAGCAAATGCGCTGTGGATCAGTACTGCGCGTCATGACAAATCCAAGCGACCCACAGCCTTCAGAGAACCCGCTCTGCTCTTACTCAACATCAGATTTAACATCAAACTCAACGTCAAACTCAACGTCAAACTCAACGTCAATCCCCACCTGCACCACTAATAATAAAACTACACAACACACCCATCTTACCACTGCTTACATTAATTGCACAGATTTCCAGCCGTTGACGGTGAAGCTGGAGAACTCGGAGGGTGAGAAGTGTTGGGGGAAGGTGAAAGTGTGCAGAGGCAGCATATGTGAAGGCGTGTGCGGCAAAATCTGGAAGGAAAAGCAGTCAGAAAGGCTGTGTAAAAATCTGAACTGCGGGAGCGTGATCCCAGGACAGTTCGAAGGACCCACAGTCGTAGAATCAGTGACCATAGGCAGCATCTACTGCCCAGACGAGACAAAAACAATCAGCCAGTGCACGTTTTTCAACCTGACTAAATCCTCCTGCAGCAGGCCAGCGTATGTCGCCTGCGCAGGAAGTGTTAAAGCCAAGCTGACGGATCCTAGAAAGAAGTGCGCTGGAAAAGCGGAGCTGTTTTATTCAGGAATGTGGCGTTCGGTGTGCTCAGATGCTTCCAGTGTATTTCAGAACACCATCTGCAAAACCTTGGGCTGTGGAAATGTCCTGAATTTCACCCAGAGCGGGAATAAGGAACAAGGAGTCTCGAAGATCACTTGTGACAATGAGACCATCACCTCGTGTAGTGGAACTGTTCTGAAAAGCTGTTCTGTTGCTCATCTCGAATGTGAAGCCTGGAGAAGGCTGCTCATCACCACGGATCACGCCTGTTCCGGTAGAGTCTACGCCGAGTCTAAGCAGGGTCCGCATGGTGTGAGTAGAGAGGGCTGGAGCGAGACGGAGGGTGAAAAGCTGTGCGATTATCTGCAGTGTAAGACGTACAGAGGTTACACTGATCACACTGCAAAACTTATAACCTACCCGCTGTGGAATAAAAGCTACAACTGCAGTACTTCCTCCAAGGATATCTGGGACTGTGAGGTCGAAAAAGAACCCACAATGCTCCAGCAGCTTGAAATTAACTGCGACGGTGAACCTGATATAACACTGGAGGGAAATTGTACAGGTCAAGTGATAATAAACAGACACGAGCGTGTTTGTTGGGAACCGCAGAACACAGGGCGTGCCCTCAATGAGCTCTGTCAACAGCTGAAATGTTCATCCTTGTTAATGTCgtgggaaaataaaactgttcaGAGCGGGTACAGCTTTAAATGCAACGGCAACGAGAACAACCTGTGGCAGTGCAGCTCCAGTAACAAGACTTGTGGCAGCGTTCTCTCTTTGGCCTGTGCAGATGCAGTACAATTCAGATTCACTGAGAACTGTGGAGGAAAACTTGAAGTAAACTACCGGGGAGAGTGGAAAACGGTGGGCTTTAAGAGCGAACTCGATGCGGATGTGATATGCGAACACAAGCAATGTGGAAAAGCAGAATCCTTAATGGGCCCTTTTCCAAGTACAGAAATATTATTTGAATGTGAAAACAGGGAGAGCCATCCAAAGCATTGCATTAAAGTCTCCTCTGGAAATTACGAGACTACAGTCAGATGTGAAAaATATGTTCCTGTGGTTGTTGTTCCTGCACCAAACACAGCACTAATTGTGGGTCTGGTGATTGGTCTGTTGTTCCTGCTGCTGGCCATTATTATTGGGATTtggcaaagaaaaacattactCGCCATGTtaagaCTGCGGCCTGCTGGGAAAGACGAGGATGTGGAGCTCAGCAGTAATGAAATGCAGGACTTAAATGAGAGAAACGACACGGATTTGCACGAGAGAAAGTCCTCTATGTTTGAAATGGACAACTATGAAGAAGTTGATCCCATCATGAACCAAGAGGACGAAGAGTCCAAAAACCAAGAGCTGCAGCCTGATGAAGAAGAGGGAGGGAGTGGCGGCTCCTCTATGACTGAATATGATGATGTGGAGGAAAGAAATGAAAAACCAATCAGATTTGAAGACAGCAGCCCTGCTGAACCCCTCCTACCTCCCAGACCACCAAACCTACTGGgtgatGTGAGTTATGAGGTGGagctggaggagctggaggagctggaggagctggaggagcaggaggagctggaggaagaTTATGATGATGCTGCCCCGGCTgtccagagtccagagccgGGAGATATGTCAGGAGGAAATGATGAGCaggtcagacagacagaagagtGAAAGATGAGCGAATTATAGACTTTTAGAGAAACAGGCTGAAGAGACTTGTTTAATTATAGCGTATCATTCGTCTTAAATCATGACCTCATTAAATTGTTTGAAATGAATTGAGAACAGCTGCAGACTGTACTGGTTTTCATGGTtgatttaaagcttttttttcagctgttgtattcttctttatttttgcctttttaattctttttttaatacagctTGCAACCAATTTTAAACAACCCTTTACTACTGGcttaaaaagttttagaacacccctattgtTTAGTACTCCAGTAGCAGAACTGTGTACATtttatcaatgactttattacggCTTATCACGTCACCTGTTAGACTAACTCCAATTCTTCctttcactgctgaaactgagactaaCTCCAATCATATTGAGCTAAAGAGCTaaaaaggctaaagctgctgtttccatgtgggtcagccagacgggACTCTTCCTGTAgcgtttttttctccagtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670928.1 True 4443 mRNA 0.47 19 37808548 37842410

Neighbor

gene id symbol gene type direction distance location
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding downstream 173093 37631057 ~ 37635455 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding downstream 209250 37547759 ~ 37599298 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding downstream 332536 37390442 ~ 37476012 (-)
slc2a6 slc2a6,LOC107599026 coding downstream 746850 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 759932 37043801 ~ 37048616 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 11370 37853780 ~ 37958375 (-)
gripap1 gripap1,LOC107743091,LOC107653413,LOC107734529 coding upstream 166144 38008554 ~ 38086312 (-)
LOC103047168 NA coding upstream 245177 38087587 ~ 38095443 (-)
LOC103022934 pdlim2,LOC103022934,LOC107724143,LOC107740981,LOC107702839,LOC108265771 coding upstream 481575 38323985 ~ 38408228 (-)
LOC103028719 sorbs3,LOC108265711 coding upstream 568392 38410802 ~ 38471423 (-)
G57272 NA non-coding downstream 133287 37644200 ~ 37675261 (-)
G57225 NA non-coding downstream 362505 37445734 ~ 37446043 (-)
G57218 NA non-coding downstream 419129 37381076 ~ 37389419 (-)
G57201 NA non-coding downstream 499434 37308669 ~ 37309114 (-)
G57199 NA non-coding downstream 504304 37303870 ~ 37304244 (-)
G57351 NA non-coding upstream 3649 37846059 ~ 37846284 (-)
G57364 NA non-coding upstream 218814 38061224 ~ 38126192 (-)
G57366 NA non-coding upstream 255186 38097596 ~ 38120711 (-)
G57368 NA non-coding upstream 289071 38131481 ~ 38136001 (-)
G57374 NA non-coding upstream 410237 38252647 ~ 38252920 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 481812 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 508941 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 1016104 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 1061914 36680166 ~ 36746634 (-)
G57014 NA other downstream 1405250 36402850 ~ 36403298 (-)
LOC111192682 NA other upstream 418707 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1679134 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2275379 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2322990 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 2906331 40748741 ~ 40756014 (-)

Expression


Co-expression Network