LOC111192716


Basic Information

Item Value
gene id LOC111192716
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43161235 ~ 43162382 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670931.1
ATGCCACCCACCCAGCACCAATCATCTCCCAATCACTATCCTACCACCACACAATCATCTCCCAGTCACCACCCAATCACAATCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACACAATCATCTCCCAGTCACCACCCAATCACAATCCAATCATTACCAATCATCTCCCAATCACTATCCTACCACCACCCAATCACCGTCCAGTCACCACCCAATCACAATCCAATCATCACCCAGTCACAATCCAATCATCTCCCAATCACTATCCTACCACACCCCAATCATTTCCCAATCACCACCCTACCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCACCACCCAATCACAATCCAATCATCTCCCAATCACCATCCTACCACCACCCAATCACCACCCCATCACCACCCAATCACAATCCAATCATCTCCCAATCACTATCCTACCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCACAATCCAATCATCTCCCAATCACATCCTACTACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTTCAATCATCATCCAATCATCTCCCAAACACAGTCCTACCACCACCCAATCACAATCTAATCATCACCCACTCATCTCCCAATCACATCCTATTACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTTCCAGTCACCACCCAATCATCTCATAAACACAGTCATGCCACCACCCAATCATCTTCCAGTCACCACCCAATCACAGCAGAGGCACTGCGCACTCCTCTGTCAGGGGCGGAGTTTGTGGAGTATCAGCGCTGCAGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670931.1 True 1032 mRNA 0.49 2 43161235 43162382

Neighbor

gene id symbol gene type direction distance location
map3k12 map3k12,LOC107711606,LOC107715569,LOC107663586 coding downstream 73364 43063287 ~ 43087871 (-)
LOC103028227 LOC108432121,LOC108432118,LOC108432095,LOC108265470,LOC108265625 coding downstream 121249 43030331 ~ 43039986 (-)
LOC103043615 LOC108432095,LOC108432121 coding downstream 132158 43017361 ~ 43029077 (-)
LOC103044132 LOC108432121 coding downstream 153001 42996976 ~ 43008234 (-)
LOC103044416 sult1st3,LOC108432121,LOC108265623,LOC108432095,LOC108432118 coding downstream 168859 42979466 ~ 42992376 (-)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327 coding upstream 24878 43187260 ~ 43340380 (-)
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding upstream 183117 43345499 ~ 43366461 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 295977 43458359 ~ 43539305 (-)
LOC103023596 NA coding upstream 401350 43563732 ~ 43638989 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding upstream 756847 43919229 ~ 44038635 (-)
G58470 NA non-coding downstream 21952 43136244 ~ 43139283 (-)
G58430 NA non-coding downstream 68322 43092558 ~ 43092913 (-)
LOC111192735 NA non-coding downstream 207851 42952416 ~ 42953384 (-)
G58411 NA non-coding downstream 226038 42922459 ~ 42935197 (-)
G58404 NA non-coding downstream 287475 42872653 ~ 42873760 (-)
G58476 NA non-coding upstream 6174 43168556 ~ 43169692 (-)
G58475 NA non-coding upstream 7752 43170134 ~ 43171136 (-)
G58490 NA non-coding upstream 116410 43278792 ~ 43335618 (-)
G58509 NA non-coding upstream 211954 43374336 ~ 43395114 (-)
G58510 NA non-coding upstream 284134 43446516 ~ 43446724 (-)
G58435 aaas other downstream 53612 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 1762757 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 2405221 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 2982094 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 3042140 40117789 ~ 40119095 (-)
G58537 NA other upstream 519942 43682324 ~ 43682684 (-)
G58649 NA other upstream 1205518 44367900 ~ 44368368 (-)
G58678 NA other upstream 1311777 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 1423924 44586306 ~ 44622074 (-)
G58868 NA other upstream 1898727 45061109 ~ 45061674 (-)

Expression


Co-expression Network