LOC103028608 (xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171)


Basic Information

Item Value
gene id LOC103028608
gene name xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49470432 ~ 49539741 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670936.1
ATGGTCAAACTGGTTCTGCTGGTGAAGCATTATGGCCAGGCTCGGCATGGATTGGAGCTGCAGATGCAGCAAGAGTGGGTCCGGTTGGAAAGGTCGCTGGGTCCGGTGGGACTGCAGATGTCTGCACAgatatctgattggctgatggatGGAGAGGCGCTGTTAAGGGAGCGTTGCCTGGTAAAACATTCCAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGAAAACATTCCAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGTAACATTCCAAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGAAAACATTCCAAAATCAACACCTTCTACTCAGATAAACATTCCAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGTAAACATTCCAAAATCAACACCTTCTACTCAGGAAAACATTCCAAAATCAACACCTTCTACTCAGaaaagTTAGCTGAGGCTCAGAGGCGCTTTGCGACGCTGCAGAATGAGCTGCAGTCGTCGCTGGACGCTCAGAGGGAGAGTAACGCCCCGGGACTGAGGAACCGGCGGAAGACGGTGTTCCCCCTGACCCACGAGGAACGCAACAAACACCGGAACATCAAAGACCTGAAACTGGCCTTCAGCGAGTTCTACCTCAGCCTCATCCTCCTGCAGAACTACCAGaaTCTGAACTTTACCGGTTTCCGGAAGATTCTGAAGAAGCATGATAAGATCCTGGAGACATCGCGTGGTGCAGACTGGAGGGTGGCGCATGTGGAGGTGGCTCCGTTCTACACCTGCAAGAAGATCACCCAGCTCATCTCAGAGACCGAGACGCTGGTGACAACAGAACTGGAGGGAGGCGATCGGCAGCGAGCGATGAAGAGGCTGCGGGTACCACCTTTAGGAGCGGCACAGCCTGCTCCAGCGTGGACAACGTTCCGAGTTGGGCTGTACTGCGGAGTCTTCATCGTGCTGGTCGTCTCCTTCATCCTCACTGGTGCTGTTTTCTACCATGATAAGAACATCTGGCCGATGGTGCGGATGTACCGTGGCAGCTTCCTGCTGATCCAGTTCCTCTTCCTGCTGGGTATTAACACATACGGCTGGAGGCAGGCCGGCGTCAACCACGTCCTCATATTCGAACTGAACCCCCGCAACAACCTGTCCCACCAACACTTGTTCgagatTGCTGGATTTCTGGGGGTTCTCTGGTGTATCAGTATACTGTCATGTCTGTACGCTGATGCCACAGGGCTGCCCATGCAGGCTAACCCACTGATCCTGTACGGCCTCatgctgctgttcctcattAACCCCTTCAAAACCGCGTACTACAAATCCCGCTTCTGGCTCCTCAAACTGCTGTTTCGTGTTTTCACGGCTCCGTTCCACCGAGTGGAGTTTGCAGATTTCTGGCTGGCGGATCAGCTGAACTCGCTGGTGATTGTTCTGATGGATCTGGAGTATCTGGTGTGCTACTACAGTATGGAGCTGCAGTGGACCGAAGTGGATGGACTGCTGCCCCACAGCCAAGGTGATGGGAAGTGCCACACGTACTCGTACGGGCTGCGGGCCATCATCCAGTGTTTACCTGCCTGGCTGCGGTTCGTGCAGTGTCTCAGGCGCTACCGAGACACCAAGAGAGCCTTTCCTCACCTGGTGAATGCTGGGAAATACTCCACCACCTTCTTTGTGGTAGCGTTTGCAGCTCTCTACAGCACTCACAAAGATCAGGATGATGTTGATGCAGAGGCGTTCTTCTACCTGCTGATCCTGTTCTCCACCATCAGCTCTCTCTACACCCTCATCTGGGACCTGAAGATGGACTGGGGTTTATTTGACCGGAACGCAGGAGAACACACCTTCCTCCGCGAGGAGATCGTCTACCCACAGAAAGCATATTATTACTGCGCGATCGTGGAGGACGTGATCCTGCGCTTCGCCTGGACGCTGCAGATCTCTCTCACCACCATGACCAACATCCCCTCCATCGCTGACATACTGGCCACTGTCCTCGCTCCAATGGAGGTCTTCaggcGGTTTGTGTGGAACTTCTTCCGTCTGGAGAACGAGCACCTGAATAACTGTGGTGAGTTCCGTGCGGTGAGAGATATCTCAGTGGCGCCACTGAATGCAGATGACCAGACAGTGCTGGAGCAGATGATGGACCAGGAAGACGGAGTTAAACACCGGCAGGGCAAGAAGAGCTGGAAGAGAAGCTACAGCCTGTCCCTGCGCCGCCCACTGCTGTCCTCACAgtctAAGAAGGACACCAAGGTGCTGATTGAGGACACAGACGACGAAGCTTTCAGTTAAAGAAACAGATCAATTAAGCATGCTAACGTGGCTAATGCTCAGAATGTAAGGTAGCAGGTATCAGTTAGCATGATGTTGTTAGCATCATACTGACTGCTGCCCATTCACTTTCTTTCACCTACATTTAGCAGCGTTAGCATTTCTTACTGAACTGTTCCTTTAAACCCAGAACAAACGACCCACCTTCCATCCGCATCCTCACAGAGCTGCCTCAGCATCACACCcaaccccatacacacacacacacacacacacacacagacacacacacagtcccacACTCTTATTCAAAAATTAGTCACTCATACAGAACAATGAAGGAGCACAATCAGCACTAAGACATATCAATACTGAGGCAAACACTGCATACtaacacacacgtatacacaaACATGTACGCACACATACAGTACTtacagatattttttattttattaactttttagaatttttttatttaactttttggtTTGTATATTGATTtatagctgttttataaaggaCTTATTAACacataaatataacaatatgactgtttacaaacacataATAACCAAACTCTACAGGGAAAAGCGTCTTTATGTCAAAA

Function

symbol description
xpr1a Predicted to enable inositol hexakisphosphate binding activity and phosphate ion transmembrane transporter activity. Predicted to be involved in cellular response to phosphate starvation and phosphate ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and plasma membrane. Is expressed in female organism. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human XPR1 (xenotropic and polytropic retrovirus receptor 1).
xpr1 Enables several functions, including inositol hexakisphosphate binding activity; phosphate ion transmembrane transporter activity; and virus receptor activity. Involved in cellular phosphate ion homeostasis and phosphate ion transmembrane transport. Is intrinsic component of plasma membrane. Implicated in basal ganglia calcification.

NR:

description
PREDICTED: xenotropic and polytropic retrovirus receptor 1 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670936.1 True 3088 mRNA 0.49 16 49470432 49539741

Neighbor

gene id symbol gene type direction distance location
LOC103029228 NA coding upstream 161657 49272994 ~ 49308775 (+)
cep350 NA coding upstream 201560 49203268 ~ 49268872 (+)
cacna2d3 cacna2d3 coding upstream 1052220 47998093 ~ 48418212 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding upstream 1536821 47927955 ~ 47933611 (+)
il17rb NA coding upstream 1576477 47880396 ~ 47893955 (+)
sin3b sin3b,LOC106613916 coding downstream 8903 49548644 ~ 49568835 (+)
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding downstream 30971 49570712 ~ 49600806 (+)
ndufb11 ndufb11 coding downstream 63050 49602791 ~ 49606898 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding downstream 68858 49608599 ~ 49613480 (+)
LOC103027985 LOC108265720 coding downstream 87353 49627094 ~ 49643347 (+)
G59976 NA non-coding upstream 9926 49459449 ~ 49460506 (+)
G59972 NA non-coding upstream 15329 49454429 ~ 49455103 (+)
G59970 NA non-coding upstream 17104 49452522 ~ 49453328 (+)
G59883 NA non-coding upstream 198449 49239227 ~ 49271983 (+)
G59855 NA non-coding upstream 433387 49036613 ~ 49037045 (+)
G59960 NA non-coding downstream 4908 49544649 ~ 49546981 (+)
G60013 LOC105906375 non-coding downstream 140901 49680642 ~ 49683666 (+)
G60017 NA non-coding downstream 215542 49755283 ~ 49755595 (+)
G60034 NA non-coding downstream 399775 49939516 ~ 49990321 (+)
G60041 NA non-coding downstream 461168 50000909 ~ 50001120 (+)
G59961 NA other upstream 32819 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 100181 49322278 ~ 49370251 (+)
G59806 NA other upstream 471961 48998160 ~ 48998471 (+)
G59782 NA other upstream 590809 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 1809075 47623554 ~ 47661357 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 327877 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 1099753 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1736459 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1847829 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2225338 51765079 ~ 51826103 (+)

Expression


Co-expression Network