kcnn1 (kcnn1b,LOC108413565,LOC107598990,LOC107589798)


Basic Information

Item Value
gene id kcnn1
gene name kcnn1b,LOC108413565,LOC107598990,LOC107589798
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 50111467 ~ 50193499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670938.1
ataataaaaaagtgaaatatctaTTTATAAAAGTAAGGAGGGGCGCACTGGCACATTTGGTGGCAGGGGCCAATTAAATTACCACCAaagcagaaaaaagaagaaaaccaaaaaagaaaacaaggtgGAGGTGGGGTGGTGCGAGTGACGTCATGAGGCTGGTCCTGGTCAAACCCGCCAATGAAACGAGCCTGTTGGACTCGACTGGGGTTGCACGCAGCCCAAGGGCTCCGGATCCCTGCAGCGCCCAAAGGCCtgagcagcaacagcagcagcaacagcagcatcaGCCAGCtggaggggaggaggaggaggaggaggaggaagaggaggaggaggaggtgatgCAGCATCGCCAACCGGCCGCTGTGCACCACCAGTACCAACAATACCAACAACAGCACCACCAgtaccagcagcagcatcagcagcagcaacagcagcatcaACAGCCACTGCCACCACCACTGCCACCACTGTGCAGCCTGCCTCCGCCGCCACCTCCGGCGCATTCCAACCACCAACGCCGCTGTTCGCGCACCCAACCCGGGCGAAGCTGCTCCGCTTACCCGCGCCCTCCTCCGGCTCCTTCCAACGTCAAGTCTCCATCTCGCCAGACGCATGCAGCATCACCAAcgccaccacctccaccaccacccagaCGCAGCTGTCAGCACGAGCTTTTAGTACTCGAAAGCAAACAgcaacaacagcaccagcaacaGCGGTGCGTGTGCGGCACGCCGCCCGTGCAGAGCGACCCTTTCGCCGGATTGCTCCTGCTACAGAGCCCGGTGACTTCGGAGCCGCCCGCGGAGCCCCAGGAGCCGATTTTACAGGTGCAACAGCAGCGGCTGGTGAGAAGCAGCCTTCCCAACTGCTGCGTCCAGCAGCCGGCTCTACTGCAGCAACACACTCAGCCTCAGCAACAGCAACAAGCGCCCCATGCAGAATGGCAACAGAGGAAGCAGCAGGACCGTGAGCACGACGCAAAGCCCAAGCCGCAGCCGCACTGCCTCTGCCTCCAGCCGGGCAGCCAGCCGGCCACTGCGCGGTGCGGTAAAAGCAGCCCGGGGGGACGCAGGAACGAAGGGCATCAGGTGAGTCCAGATGCCAGCAGGCTGAGCCATGCTTGGTCGCGGTCTTCGCTGTCCCCCAGCGGCCCCCCGGTCCCTCAGATAGCCATGAACAGCTGCAAGTACAATGGAGGCGTGGTGAGACCGCTGAGCAGCCTGGGGGCGTCCCGGAGGAACCTGGCCGATCTGGACTCGGAGACGCAGCCCCTGCAGACCCTCCACACCTCCGGCCTCGAGGTCGTGGTGTCCAAGGGCAACGGAGACGATCCGGGCAAGGCGTCCCGCGAGAGCCTGGTGCGAGAGGGCGGGAGCAACGCCCCTCAAAAGAGGAACAAGGACATCGGCTACAAACTCGGCCACAGGAGGGCGCTGTTCGAGAAGCGCAAGCGCCTGAGCGACTACGCCCTGATCTTCGGGATGTTTGGCATCGTCGTCATGGTAACGGAGACCGAGCTCTCCTGGGGGGTTTACACAAAGGAATCCTCATATTCATTTGCACTGAAATGCCTTATCAGCCTTTCCACTCTAATTCTCCTCGGTCTGATTATTATGTATCATGCACGAGAAATTCAGCTGTTCATGGTGGATAACGGAGCGGACGACTGGCGGATAGCCATGACCTACGAGCGGATACTGTTCATCgtcctggagctgctggtgtgtGCCATTCACCCTATCCCGGGACACTACGTCTTCACGTGGACGGCGCGTCTGGCCTTCACGTATGCACCGTCCGTGGCGGACGCGGACGTGGACATTATCCTGTCCATCCCCATGTTCCTGCGGCTCTACCTGATCGGCCGGGTCATGCTGCTCCACAGCAAGTTGTTCACGGACGCTTCGTCGCGCAGCATCGGCGCCCTCAACAAGATCAACTTCAACACGCGCTTCGTCATGAAGACCCTGATGACCATCTGCCCGGGCACCGTCCTGCTGGTCTTCAGCATCTCGTCCTGGATCATAGCGGCCTGGACAGTGCGGGTGTGCGAAAGCAGTGCTTCTCATCTATGGGgactaaacaagctgtgtGTACTGATCTCTGACTCGTGTTGTTTCTCCTCACAGGGAGCCGGCTGTACCGccctggtggttgctgtggtcgCCAGGAAGCTGGAGTTGACCAAGGCGGAGAAACACGTCCATAACTTTATGATGGACACTCAGCTCTGCAAAAGAGTGAAGAACACGGCTGCTAACGTACTCAGGGAAACGTGGCTCATCTACAAACACACCAAGCTCGTGAAGAAGATCGACCACGCCAAGGTCAGAAAACATCAGCGCAAGTTTCTGCAAGCCATTCACCAAGCTCAGAAACTGCGGAGTGTGAAGATGGAGCAGAGGAAGCTTAACGATCAGGCGAACACACTCGTCGATTTAGCCAAGACGCAGAATGTGATGTATGACCTGGTGTCAGAGCTGCAGGAGCGCAGTGAGGAGCTGGACAAGCGGATCGGTCAGCTGGAGGAGAAACTGGACTCCATTACCTCCAGCCTGCAGGCTCTGCCTGGCCTGCTGTCCCAAGCcatactgcagcagcagcaccacctgCTGGACGGGCTGATTCAGCACGGCCTGACGCTAACGCGGCCGTCCTCGCAGGCGTCCGAGCGCTCCTGGAGCTCGTCGGTCCGCCGGCGGAGATCCCCGTCCACTGCTCCACACACGTCCTCCGACAGCGGATAgcccgctcacacacacacaacacacacacacacacacacactcttgacttgcatacacacacaaacgcgTGCTCACTCACTACCACTCACTACTCTGCCATCCTTGACTAACACTGCTAAAAACTACTTTTAGTACTAAAAtcggaaaaaaaataaacgatGACTTCGACACACTGGAAAAAACAACGTAATGAGTTAACAGTTCATGGTAGACATATGGTTTACGTTTAGCCATTGTATGGCTGTTTAAAGTTAGCTTTTTTGTAAAGCCCTTGTATAGTTACGGACTGGATCCAGGGTGCTGGGGGGGCAtcgggaaaataaaaaaaaacaccgccAGAGAGAAAGCCACGCTTTTTCTCACCAGAGGAAAAATTGGACGAAATCTGAGAAATAACCGAGCGAGTgagcaagagagcgagagagagggagagagagagagagacagcgactTCCCGAAGAACTTACACACAACACGTACGTACAGCTGGTATGGGCGAACACAGGGGCCTTTGGGAGCTCTGACCTGGAGCTAAtatccaccaaaaaaaaaaacctacaatGACCAACACAGACGGAGAAGCGCGGAAATGTTCAGAACGAAgaccacaagaaaaaaaaattgatgtagTCACATTGCCGGATTCCAAAAATGATAAACTGTGTTACCAAACAAGCGTCAGATAAGAATTCTCACGTTTGTGCTGAATGGAAATGTTGCTGCCAGTGTGAATTTTTTGCACGTTTGAAGACGAGTTTAATTTTCACTCCTGAAGTTTCGAGAGTAATAGTTTACAACAAACCCCGCCCTCATCACCCGAGCATGTCTGGGAAGCGTCAGATCTGAAGcaaatcactgtgtgtgtgcgagttTTACCTACCTTCCGTTCCTTTTCTTCTTAGTTTCAGTTTTCGTTGCTGTTGATCTgttgttcttttgtttattcATCACTGCTTTGTTTGTACGTTTGTTTTCGGTCCGGAttgaaaaaaaactacattcctgtttttgtgtgtttttttgttttctacaaaATGAACGCAAGTGCCCAAAATCGAATTTTGCATTGTAATGTTTAGGAGACTGGATGTCAGAAGCTGACGTGGTGTGAATGATACAGTAAATACgataaatgtagtattttaaagtggtatttaCGGTAAACACGGTTGGCTGGTTTAATTGGAGGCCTGTGATTTTAAACACAGAGACATTTCTTGGTAAACCATCCTCGCCTTTAATCAGAGCTTCCAAGGGTCCTTCACAGCTGCTTTAGTTCAGGCCGAGGGTTTGACCGACCGGTGGATTTCGGACCAGACGACAGGAAGAACACCCCACCCCTTGCATGTTTCAATGCAAATGACGATGGAGCTAACCTATGGGATGgctttatgttattttttccttttctcttcctttttttcattttttacaaagattcttttttattatttacctaGAATTTTTATAGCTTGTAGAGGATCTACTATAATATTACTACAGAGTGGCAGCATAGTTGAATTCATGCATTCCTAGATCAAAGACCAAAAAACCACCAGAAAACAaaatgagattaaaaaaaatacagaaagaaaagaagaagaagagactAATTGCTCATTTGGATATCAATACCATCATAGATCACATGAAATTGAATTGATTAGGTTCCCAGCTCTGTATCTGAGACTAAACTTAAGATGTGGTTGTTTTTACGggtttaaatgacaaaaaaaaaaaaacatggaaagaaaaaacaacactgaCAAACAAACTGCCTTTACCGTGTGTCTTCGGCCTTGTTGACCAACCTGTAGCAGATGAACTTGATGCTGGGCTccaatataaagaaataaatccaCAAATCCTGAA

Function

symbol description
kcnn1b Predicted to enable calmodulin binding activity and small conductance calcium-activated potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection; neuronal cell body; and plasma membrane. Is expressed in head; heart; and nervous system. Orthologous to several human genes including KCNN2 (potassium calcium-activated channel subfamily N member 2).

NR:

description
PREDICTED: small conductance calcium-activated potassium channel protein 2-like isoform X1

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0016286 small conductance calcium-activated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670938.1 True 4631 mRNA 0.51 10 50111467 50193499

Neighbor

gene id symbol gene type direction distance location
ccdc124 ccdc124,LOC107744596 coding upstream 20050 50072319 ~ 50091417 (+)
b3gnt3 b3gnt3 coding upstream 124354 49970111 ~ 49987113 (+)
LOC103027051 NA coding upstream 143275 49932765 ~ 49968192 (+)
LOC103024709 NA coding upstream 301388 49797273 ~ 49810079 (+)
LOC103027656 NA coding upstream 319994 49784459 ~ 49791473 (+)
LOC103026155 LOC108413566 coding downstream 6567 50200066 ~ 50246511 (+)
LOC103021573 LOC108414650 coding downstream 54210 50247709 ~ 50272906 (+)
spag17 NA coding downstream 142050 50335549 ~ 50368567 (+)
LOC103025544 LOC108413600,LOC107725316 coding downstream 177594 50371093 ~ 50420324 (+)
LOC103044272 LOC108415017 coding downstream 545812 50739311 ~ 50747362 (+)
G60060 NA non-coding upstream 17990 50093112 ~ 50093477 (+)
G60059 NA non-coding upstream 26434 50081636 ~ 50085033 (+)
G60047 NA non-coding upstream 85460 50025489 ~ 50026007 (+)
G60041 NA non-coding upstream 110347 50000909 ~ 50001120 (+)
G60034 NA non-coding upstream 121146 49939516 ~ 49990321 (+)
G60065 NA non-coding downstream 80177 50273676 ~ 50276276 (+)
G60121 NA non-coding downstream 283420 50476919 ~ 50566228 (+)
G60081 NA non-coding downstream 460929 50654428 ~ 50660806 (+)
G60150 NA non-coding downstream 595815 50789314 ~ 50798761 (+)
G60149 NA non-coding downstream 607030 50800529 ~ 50838759 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other upstream 121050 49867618 ~ 49990417 (+)
G59961 NA other upstream 673854 49423516 ~ 49437613 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 741216 49322278 ~ 49370251 (+)
G59806 NA other upstream 1112996 48998160 ~ 48998471 (+)
G59782 NA other upstream 1231844 48870167 ~ 48879623 (+)
LOC103045694 NA other downstream 445995 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1082701 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1194071 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 1571580 51765079 ~ 51826103 (+)
LOC111192705 pim2,LOC107601747 other downstream 1634855 51828354 ~ 51832271 (+)

Expression


Co-expression Network