LOC103027674 (LOC108425035)


Basic Information

Item Value
gene id LOC103027674
gene name LOC108425035
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1772919 ~ 1786362 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670945.1
TCTGGTACTTTACTGCACTTATTTAGACTGGAAAATCCAAGCTAAGCTCATTTTTCAGGATCATTTTATCCTTTTGGGTGATTTTTGTTAAAGCGGGAACATTtatacagcttttttttctgtaaatgggGAGGTGTCGATCAGTGAAGATGGGTCGTGTTCTGATTCTGATGCTGTGCATGTTCATGTGGATGCCACTCTATGCTGCATTACACAAAAAGGACCTGAAGGAAGCTACAGTCTATTTAACGAAATATGGATATCTTCCTACATCACTTCATCATCCCAAGGACCAGGATGGCCAGGTGAAGCAAATATCTGAGGCTCTCAGggtttttcagAAGGTGATGGAGTTGCCGGTGTCCGGCAGACTGGATAATGCCACACTGGTCATGATGAAACAGCCCCGCTGTGGCCTGAAAGACCCCTTCAACAACAGGACCCTCAAATACCGCGTTCTGGGTCACTGGAGGAAGAAGACTCTGAGCTACAGGATCTATAACCACGCCTCCAGTCTGGGCGTGGCTAAAACCCGAGCCGCCATTCAGACAGCGTTCAGGTACTGGAGCGAGGTCTCGCCCCTCCGCTTCCACGAGCTCAACAAGGGACATCCCGACATCAAAATCTCCTTCCACGGGCGGGACAGGGTCTGCCCCGTACCCTTCGATGGACCAGGTGAGGTTCTGGCCCACGCTGACAGTCCAGAGTCTGGGTTAGTGCACTTTGATGAAGAAGAGCTGTGGACGGAGGGGAAGAGCACGGGGTCTAATCTACGAATAGTAGCAGCCCACGAGATTGGCCACGCCCTGGGTTTAGGCCACTCCCAGTATCGCAGTGCTCTAATGGGCCCAGTGTACACTGGGTACCGCAACAACTTCAGACTTCACCCTGATGACGTGCGCGGTATCCAGGCGCTGTACGGTAAGCCTGTGGAAAAGCCACCACCCGCCCCGGCAGTGCCGAATAAGCCACCAGCCGACTCAGCTGCCCCGGATCCCTGCACTGCCTCACTGGATGCCATAATGCTGGggCCTCTTCACAAGACGTTTGCGTTCAGTGGAGATTATGTTTGGACAATATCAGATGCTGGCTATAACACACCCATACGGATTAACGTCCTGTGGAAAGATCTACCAGGACACATAAACGCTGCGGTGCATTCTCCCAGAACCAGCAAATCCTACTTCCTTAAAGGTGAAAAGGTGTGGAGGTATTCTGGGTTTAAGTTGGATCACAGCTATCCCAAAGTGCTCCTCATCCCTCCTAACATCGACTCCGCCTTTTACTCCAACGCCAACAAAAAACTCATATTCATCAAGGGTTCAGAGTACTGGCAGTGGGATGAACTGGGCTCCAGTAATGAACTCAGGCAGTATCCTAAATCTCTGAAAGAGCTCGTTACGGGATTACCATCCAATCCGGATGCAGCGTTCACCTGGACTAACGGCCACACCTACCTGTTTAAAGGTGATCAGTACTGGCGTATTAACCCCCGAGGCTTCATAGAGAAGGGATACCCACTCAGCAAGCAAGATCGCTGGATGCAGTGCAGCGATTAACCCCCTATatactgtacagctctggaaaaaaaaggagagcacttaaaaatgagtttctttgat

Function

NR:

description
PREDICTED: matrix metalloproteinase-19-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670945.1 True 1622 mRNA 0.50 9 1772919 1786362

Neighbor

gene id symbol gene type direction distance location
pym1 pym1,LOC102777374 coding upstream 8844 1760812 ~ 1764075 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding upstream 311221 1415274 ~ 1461698 (+)
ajap1 ajap1 coding upstream 1295623 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 1503397 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 1641281 122069 ~ 131638 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 213212 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 573560 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 679231 2465593 ~ 2474573 (+)
klhl12 klhl12 coding downstream 692229 2478591 ~ 2506196 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 723782 2510144 ~ 2521419 (+)
G48822 NA non-coding upstream 45637 1639979 ~ 1727282 (+)
G48815 NA non-coding upstream 161687 1606475 ~ 1611232 (+)
G48772 NA non-coding upstream 266633 1491321 ~ 1506286 (+)
G48805 NA non-coding upstream 352717 1419732 ~ 1420202 (+)
G48803 NA non-coding upstream 377296 1392909 ~ 1395623 (+)
G48857 NA non-coding downstream 17395 1803757 ~ 1904244 (+)
G48868 NA non-coding downstream 48956 1835318 ~ 1851766 (+)
G48887 NA non-coding downstream 103545 1889907 ~ 1934861 (+)
G48891 NA non-coding downstream 107556 1893918 ~ 1895755 (+)
G48897 NA non-coding downstream 130233 1916595 ~ 1952370 (+)
G48714 NA other upstream 961654 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 1196484 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2413577 4199939 ~ 4239873 (+)
G49475 NA other downstream 2458166 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3832797 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3990690 5777052 ~ 5789265 (+)

Expression


Co-expression Network