LOC111192730


Basic Information

Item Value
gene id LOC111192730
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28881879 ~ 28884887 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670954.1
atttactgttttattaattgtattgtgttttacttattatattattgttatattgtctGTATTGTCTGTTATTAATCTTATATATTTTGCTTTTCAGGTGTCGGAGGCCGGTGAGGGTATACTGACACCCCGCTGTCCGACATGGAGTTTTGGCGTAGCGAAGAGCATCGCCTAGAGGGGGCTTCTGGTGGTTCAGGAGACCCCTTCATTCTGCTGCCTTTTTGTGGCACTGAGGAGCTGAGGGCTGCCTGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGACGGAGCTCAGGAGGGTCCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACACGACTCTCCCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGATGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTCGAGGGGAAGCTGAAGGCCCTCATTGAGAAGCAGCTTGCCTGTCCCAGGCCGCGTGTTGGGAGTGTCCTGGTGCCAGTTATGGAGGCAGCCCCTGCTCACAGGCTGGACTCTACCGAGCCTGATATCCCAGGTCCAGTTGCACAGTGCGaagaagctccagctccagacCTCACCACCACCTCTCATCCGGAGCCATCCAGCCAGGGAGACACTGCACTGTCACCCACCACTAATACACAGTGCAGATCCCTGAAACGCCCTGTCACCAACTATCGGACCTCCTTTGTGTGTCGTTTCAGGTCTCCTCGCCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAACCTGAATTGGAGCCAGTGCCAGCTGCACAGGACGAGGACGACCTGGAGAACAACGTGGAGGTCCTGGAGTTGGAGCATCACAGGCCAGGAGAGACAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCAGCTGCTTCAGGTGGAAAGCAAGAAAGAGCTGAAAAGGTGATCTGTAGAGGATCTGGCTGTAGAgctgtacatacatacacaaacacatacataaacacatacaaTTTTGGTAAATGGGCTGAGGCACACAGTAGGATGTTAGCAGTAATCTAGATGATGGGATAGTGGTCTGGAGGTTGTGGGTAATATTCTGTGATCTCCTATGTCGTGAGCTTGGAGGGGGGTGAGTCTAGGATGCCAGAATTCACTGCTGAGTCTTCCTGAGGTGTTCAACGTAACGCTTATGAAGGGAGGTCCTCAGCGGATGACCCCTGTGAAGAGCTTGTGGCGTAGTGAAGGATCAGTGTATCAGTGAGAGAAGGGAAGGGTGGGTGTTTCAtgtttgggataaatgttgctgattggatGGTAAATGGCCACAGCAGCGTAGTTGTTAGCTGTAGGAGTTTATGGTTCTCGTGTAGTTTAATGTAAATGAgtgggagagtagagtatagaaGGGAATGGGCGGAGCTCTAGATTTAACCACAGTTGCGTTACTTACATAGATATAGAGATAGACGAATAGGATACACATAGAAATACCCACACAGTaatacactcacatac
>XM_022670955.1
atttactgttttattaattgtattgtgttttacttattatattattgttatattgtctGTATTGTCTGTTATTAATCTTATATATTTTGCTTTTCAGGTGTCGGAGGCCGGTGAGGGTATACTGACACCCCGCTGTCCGACATGGAGTTTTGGCGTAGCGAAGAGCATCGCCTAGAGGGGGCTTCTGGTGGTTCAGGAGACCCCTTCATTCTGCTGCCTTTTTGTGGCACTGAGGAGCTGAGGGCTGCCTGTCTGCAGTGGCAGGGTGAGGGTCCAGACCCCTGGACGGAGCTCAGGAGGGTCCAGCATGAGTTCCTCGAGGGGAAGCTGAGGGCCCTCATTCAGAAGgtGGAGTCTCACTGCGCACACGACTCTCCCACTCTCCTGCCTTTTTGCGAGGAGCCAGACCCCTGGATGGAGCTCAGGAGGGTTCAGCTCGAGTTCCTCGAGGGGAAGCTGAAGGCCCTCATTGAGAAGCTTGCCTGTCCCAGGCCGCGTGTTGGGAGTGTCCTGGTGCCAGTTATGGAGGCAGCCCCTGCTCACAGGCTGGACTCTACCGAGCCTGATATCCCAGGTCCAGTTGCACAGTGCGaagaagctccagctccagacCTCACCACCACCTCTCATCCGGAGCCATCCAGCCAGGGAGACACTGCACTGTCACCCACCACTAATACACAGTGCAGATCCCTGAAACGCCCTGTCACCAACTATCGGACCTCCTTTGTGTGTCGTTTCAGGTCTCCTCGCCGAGTCCTGGTGCAGGTAGAAGAGGCAGATCCCTCTCACCGGCTGGACCTTCAGGACACAAAACCTGAATTGGAGCCAGTGCCAGCTGCACAGGACGAGGACGACCTGGAGAACAACGTGGAGGTCCTGGAGTTGGAGCATCACAGGCCAGGAGAGACAGCTCCAAACAGAAAGAGAGGATGGCTACAGCACCTGCTCAGCTGCTTCAGGTGGAAAGCAAGAAAGAGCTGAAAAGGTGATCTGTAGAGGATCTGGCTGTAGAgctgtacatacatacacaaacacatacataaacacatacaaTTTTGGTAAATGGGCTGAGGCACACAGTAGGATGTTAGCAGTAATCTAGATGATGGGATAGTGGTCTGGAGGTTGTGGGTAATATTCTGTGATCTCCTATGTCGTGAGCTTGGAGGGGGGTGAGTCTAGGATGCCAGAATTCACTGCTGAGTCTTCCTGAGGTGTTCAACGTAACGCTTATGAAGGGAGGTCCTCAGCGGATGACCCCTGTGAAGAGCTTGTGGCGTAGTGAAGGATCAGTGTATCAGTGAGAGAAGGGAAGGGTGGGTGTTTCAtgtttgggataaatgttgctgattggatGGTAAATGGCCACAGCAGCGTAGTTGTTAGCTGTAGGAGTTTATGGTTCTCGTGTAGTTTAATGTAAATGAgtgggagagtagagtatagaaGGGAATGGGCGGAGCTCTAGATTTAACCACAGTTGCGTTACTTACATAGATATAGAGATAGACGAATAGGATACACATAGAAATACCCACACAGTaatacactcacatac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670954.1 True 1564 mRNA 0.51 9 28881879 28884887
XM_022670955.1 False 1561 mRNA 0.51 9 28881879 28884887

Neighbor

gene id symbol gene type direction distance location
msi1 msi1,LOC107687968 coding downstream 23719 28827738 ~ 28858160 (-)
tmem233 LOC107687986 coding downstream 67968 28806678 ~ 28813911 (-)
LOC103026611 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 coding downstream 78178 28794816 ~ 28803701 (-)
LOC103027379 LOC108412053,LOC108264941 coding downstream 111885 28767056 ~ 28769994 (-)
hps4 LOC102793116 coding downstream 115408 28752231 ~ 28766471 (-)
lzts1 lzts1 coding upstream 16661 28901548 ~ 28955223 (-)
LOC103024952 LOC108412520 coding upstream 335668 29220555 ~ 29388554 (-)
LOC111192660 NA coding upstream 765541 29650428 ~ 29652090 (-)
LOC103024435 NA coding upstream 785480 29670367 ~ 29702656 (-)
LOC103023912 LOC108410873 coding upstream 846551 29731438 ~ 29738545 (-)
G55281 NA non-coding downstream 8890 28872698 ~ 28872989 (-)
G55265 NA non-coding downstream 16328 28785898 ~ 28865551 (-)
G55267 NA non-coding downstream 89013 28792155 ~ 28792866 (-)
G55253 NA non-coding downstream 153895 28727612 ~ 28727984 (-)
G55251 NA non-coding downstream 165878 28715239 ~ 28716001 (-)
G55299 NA non-coding upstream 7388 28892275 ~ 28895538 (-)
G55315 NA non-coding upstream 101883 28986770 ~ 28987328 (-)
G55317 NA non-coding upstream 146200 29031087 ~ 29031325 (-)
G55320 NA non-coding upstream 283080 29167967 ~ 29168282 (-)
G55332 NA non-coding upstream 566201 29451088 ~ 29451356 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 281369 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 457924 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 724430 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 838628 28026739 ~ 28043251 (-)
G54947 NA other downstream 1150800 27728711 ~ 27731079 (-)
kiaa1671 NA other upstream 859141 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1011628 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 2750594 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 2846577 31731464 ~ 31740221 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 3887140 32772027 ~ 32802160 (-)

Expression


Co-expression Network