LOC111192733


Basic Information

Item Value
gene id LOC111192733
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35367649 ~ 35370960 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670957.1
CACTACTGAGTGAGCAGATCTCACTCTGCTGTGAATTCTACTCCGTCCCCTCCGCCGAGAGGAGACTCGTCAGGGTAGCACTGGGACGTTTACGCCATGGGACGTCCTGCAGCTCTGCTGGTTCTCTGCGTGTGTTGGGGACAGTGTGTCCTGCTGTCTGTGTCTCAGCTGCTGTCCCCGTCTGTGTCTCTGGCGTCGGTGAGAAGGAGGACAGGCTGTATTAAAGTGAATCAGTGTAAGTGTATCCTGTGGGACGGGAGCGGCCTGATTGACCTGCAGTCGCTGGGGGACGCTCAGGGGTTCCTGGAGCGCACCAGACACGTCCCGCATGAGGATCCGCCGCAGGACACCGAGGTCCTGCTCTCCTTCAGCCCGTGTCTCCCCTTCTCTGAGCCGGAGGAGTTCCCTGTCACCGACTGCACTGACGTGGCCGCCTGCCTGATTTTAAGgaGTAAAACTCATACAAATCGTTATGTGAACTACGGACGACACGAGGGAAATAAATTTCACTATAATGAATCAACGAAGACTCTCTCCGTCTTCTATTTAGcctcctcctctcactctgAGGCTCAGACCGTGGTTCACTATCACTGCAGCACCAACCGCTCCATCTCCTACAGCCTGAGCTTCAGTCTCGCTCCGCCCCTGCAGATCCGGGTGGAGAGCCCCTGCTGCTGCCCCAACGCCTGCACCCTGCTGGACGTGGGGCCGGGTACCATCTTCCTCATCATCCTCTGCCTCAGCATCACTGCTTACTTCTTCCTGGGTTCTTGTGCTCTGAGGCCGTTCAGGAGCAGTAGTGGTGTGCAGATCGTGCCGGAGGACAGCGTGTGGTGCATGCCCTGCTACCAGCTCACCGACCGACCGAGCGGCACCAAGCGCCGGAGACACTGTTCCCTGAGAGAGGAAACCCTGTAACCCCCCACTGTGCACTGTGTTATTGCTTAATCTGTTAACACTGTAACAAGGGTtgtaattaacagtacttaccacagtaataaacattacattaaatgtctcaactaatcaTTATAACGAACACTAGTAagacatacagtaaataactgtttaaagAAAGATGCTACCAAACTTATTGGGAGATcctttattattaacattatatttaattttatttaacttcgctatatcttttttatatttatttatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670957.1 True 1173 mRNA 0.51 4 35367649 35370960

Neighbor

gene id symbol gene type direction distance location
LOC103031304 zdhhc12 coding downstream 46861 35316282 ~ 35320788 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding downstream 52076 35310689 ~ 35315573 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 83359 35279823 ~ 35284290 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding downstream 108417 35246793 ~ 35259232 (-)
plat NA coding downstream 150884 35198480 ~ 35216765 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding upstream 19848 35390808 ~ 35395244 (-)
pola2 pola2,LOC107710902 coding upstream 585143 35956103 ~ 35964161 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 645933 36016893 ~ 36070995 (-)
c6h9orf116 LOC103023176 coding upstream 837256 36208216 ~ 36209659 (-)
anapc7 anapc7 coding upstream 961508 36332468 ~ 36340503 (-)
G56620 NA non-coding downstream 348 35350825 ~ 35367301 (-)
G56602 NA non-coding downstream 88759 35275947 ~ 35278890 (-)
G56600 polb non-coding downstream 95359 35265893 ~ 35272290 (-)
G56580 NA non-coding downstream 190670 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 284376 35081003 ~ 35083273 (-)
G56631 NA non-coding upstream 13818 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 66873 35437833 ~ 35440647 (-)
G56656 NA non-coding upstream 172751 35543711 ~ 35543995 (-)
G56678 NA non-coding upstream 181876 35552836 ~ 35553987 (-)
G56681 NA non-coding upstream 209021 35579981 ~ 35580235 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other downstream 35215 35321985 ~ 35332434 (-)
c6h22orf39 NA other downstream 67899 35296341 ~ 35299750 (-)
acaa2 acaa2,LOC107671002 other downstream 74228 35285422 ~ 35293421 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 259229 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2189999 33149074 ~ 33177650 (-)
G56638 NA other upstream 49870 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 395810 35766770 ~ 35767677 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other upstream 460252 35831212 ~ 35867084 (-)
mrps36 mrps36 other upstream 557520 35928480 ~ 35947822 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other upstream 600770 35971730 ~ 35992502 (-)

Expression


Co-expression Network