LOC111192738 (ninj1,LOC100690894,LOC106565158)


Basic Information

Item Value
gene id LOC111192738
gene name ninj1,LOC100690894,LOC106565158
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46405754 ~ 46423234 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670965.1
atgaacatgaaccACTACGCCAACAAGAAGAGTGCAGCTGAGAGCATGCTTGACATAGCACTGTTAATGGCTAATGCTTCTCAGCTAAAGGCTGTGCTGGAGCAGGGACCCCAGTTTAACTTCTACGCCCCACTTATAACTCTCATCAGCCTATCGCTAGGTCTGCAAATAATGGTTGGAGTGTTACTCATCTTTATAGTGAAGTGGAATTTGAATGATGAAGAGAAACAACATCAGCTAAACCTCATGGAGAACATTGCCACAGGATGTGTCTTCATTATTGTGGTAATCAACGTCTTCATCACAGCATTTGGGGTTCAACGGCCAAACCAGAATTAGTAAAGTGTACA

Function

symbol description
ninj1 Acts upstream of or within heart development and skeletal muscle tissue development. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human NINJ1 (ninjurin 1).

NR:

description
PREDICTED: ninjurin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670965.1 True 350 mRNA 0.43 2 46405754 46423234

Neighbor

gene id symbol gene type direction distance location
LOC111192690 LOC108432118 coding upstream 218854 46122861 ~ 46186900 (+)
LOC103044102 LOC108432094 coding upstream 335472 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 392086 45993058 ~ 46013668 (+)
trh NA coding upstream 462296 45940868 ~ 45943458 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 792181 45607741 ~ 45613573 (+)
LOC111192740 NA coding downstream 273245 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 404734 46827968 ~ 46851232 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 485048 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 533872 46957106 ~ 46967434 (+)
LOC103046011 LOC108412059 coding downstream 565742 46988976 ~ 47024024 (+)
G59195 NA non-coding upstream 28441 46376783 ~ 46377313 (+)
LOC111192692 NA non-coding upstream 75248 46325449 ~ 46330506 (+)
G59185 LOC108265865 non-coding upstream 76074 46318123 ~ 46329680 (+)
G59173 LOC108432102 non-coding upstream 108331 46285076 ~ 46297423 (+)
G59163 NA non-coding upstream 148943 46251699 ~ 46256811 (+)
G59203 NA non-coding downstream 12472 46435706 ~ 46437360 (+)
G59215 NA non-coding downstream 48541 46471775 ~ 46475979 (+)
G59220 fgd3,LOC106529940 non-coding downstream 60203 46483437 ~ 46485586 (+)
G59232 LOC103023429,LOC108442352,LOC108265644,LOC107549568,LOC107594970,LOC107739657,LOC107669024 non-coding downstream 177214 46600448 ~ 46607372 (+)
G59241 NA non-coding downstream 261415 46684649 ~ 46685038 (+)
G58971 NA other upstream 615600 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1538916 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1804794 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1821836 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1959251 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 429130 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1200320 47623554 ~ 47661357 (+)
G59782 NA other downstream 2446933 48870167 ~ 48879623 (+)
G59806 NA other downstream 2574926 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2899044 49322278 ~ 49370251 (+)

Expression


Co-expression Network