LOC111192744


Basic Information

Item Value
gene id LOC111192744
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 263730 ~ 269522 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670970.1
TGTCTCAATCGGCAAAGGGCAGCACTTAAAGCTCATGTTCCCTTTTCTGTACAAGTACAATATAGAGGATCTGCAACAAACatttgtctgtctatttgtGAACCACAAAGAAAACATTACAGTCGTTTCGGCAGAGTAATGGTGACCTATAACACAGACGCTAATACCTGGCATTGTCCATGTGCAAGGCCAAGAGTTTCATGTATCCACAAAAGCATTGGGAAATGGCATTTGTTTCAAACAAAAAGAGACTTATTCAAGACTACAAGTGCAGATTCACCTCATGAAACATCAGGATCAGTCTATCCACCAATCAAGACCAACTTGGAACGTGTTGTGCAGTACATTTACAAGGAGAAGAAAGTTCCAGCACACCTTCCAGCTGAACTTTTCAGATCAAAACCACTGTCTGAGTATGCCACACAGCTAATTCCAATGGAAACAAGATGTGTATTTTGCACTGAACATCCCAGTTTGGAAAAACCCACACTGATTACAGATCATGCAAGAATAGTGGGCCTTGGTGGAATCGTTGACAATGTGTCAACCTTCTTTAGGACATGCCCTCAGTGTCACATGGTGTACCGATATCAGGAGTGGCAGGCAGGACTACACAATTTTAATGACCATACTGTTCTAACTCTGGAGCTGTGCATCTTCCTTCGACACAATTTGCAGGTACATGTCTTATTTTGTTTGATCTGAGAGATTTATTTGTgtcttttaatgtattttgtgtgtgcACTTCACttcaatctcttttttttttagaatcatgTATCTGTTTCAAGGGCCATAAACTCATTGGAAGGATTACGTGAAGTAAAGTATCCTTCAAGAGATACTGTTCTTCATGCATACTGCCAGTTTGAGGCCATGACAAGCCATGATTATGTATATTCATGTATCAACTGTGGCTATTATCCACCTGTTGTTATCATGGACCTTCATAAAAAAGGAGTATTCAGCATGGCtgTAAGTGATATCAAAGATCCTCCTGAGCAGTTTAAAGGAGAGCACAACATTGAAGAGTTTTGGGACTCAGTTAATTTGGAAATGATTGCTCGTGGTTTTGTACAAAGCCGTGCAAAAAACCCGCTGGCCGTCTATCCTAGTTTTGATAGATGGGCTCCATGGATTGGAGGACATACAAGGAAGTCGGACATAGTGCTGAACACGGAATACCAAAAACTGTCCTCTGCCAAAGCCACAGCAGAAAGCAAATTGGTTATGGTAACTGAGGAGCGGCTTGTGGATGAATTAAGAAAACAGAagGTCGGCATTGTCCGAAAGCTGTGCAAAGCATGCAACATTGATTCAAAGGGATCCCGTGATGACCTTATTCTGAGACTCCGTAACGAAAtgaaaaatagacattcatatGACAAAGTCTTCCAGAAAATCTGGGGTGCTTCTGgtggCTGGGCTGTTATTGCATGCCCCCATGGCATTGTATACAGCCTAAAATTCAATTTGAGGGCAGAGTCTCCTCGGGACTTCGCTGATCTTCTCATGTCATGGAAGCACCTTCCTAATGTATCAGTGTATGACTTCGCCCGTGGTCTCACCACTCATACCAACTTGCGGTTTCCTGATGTAATGCCCTTTCAGCCAAACGAAGGAAGACTGGCAGAATGTACCCCTGACAATATCACAGCAGCTCAAAAAGGAAAACTCGAAGTATCTCTGTCATGGTTACTTGAAAAGAAAGTAAATCCTGACCCTGAAAGCCATCCTACAACTGGATCCTCCTGCCATTTTGCCCTGTATGATAAATTTCATGAATCCAACACAAAGGATCAACGGGATGTGCTGAGAAGGATTAACCTTGTACCAGAACTGCAGGGATGGCTAAACAGTCAAGTGGTTGAGCAGCTTTTTGGAGTCATGAAGAAAAACAACTATTTTCTAAACAACATGGCACCGTCAACACACGTTTTTATGATGCGGAACATAATTCACCATCGCAACGTTGGAACAAACCAGCAACTTTTGGACCAGCAACTGCATAAAGGCCTTAAATTCCACCACATGCACACAATTGCCCTGAATGAAGTAGGACAAGCTGTGTTGAAAGAGGCCTTTCTGTCATCTACTGTTCAATCCTCCACTGATTTGCTGCAGGAAAGATCTTTTCAGTCTTCATCTGACATGGGAAATGTCCAGTGTGGATTGCAATGCGAAGCGCTCACAACATTTGGTAACATAAAAGCCTGTAGAAGTTCATGGACACTGGGAAATCACCCTAATCAAGAGAAACTGCTGTCCTATGTCCTGGACTCTGAAAGGCCAGGAAATGAGCTCATAGTCAGGATTGGAAAAACCTGTTTGACAAGAGAAGACTTTCTGTCCTTAGGCACGTCCCAAGACATGGAGGCAACCattgGAAATTGCTGCTTTGAACTGATAACGGAAATGGCCAAATCATGTGGGAAAGACATTTTCATCGCTGACCTGTACGTTGTCCCAACCTGGCTGCCACCACATAATTGTGACCCAATGCTCAGCCTGCCTGTATTGAAGCCAGCTGAGAGAGAAATGCTCTTTCTTGACTCACAGTATTCCCAAGCACCACAATCACAGGGATTTCGTGATCAGACATATAAGATGCTGTTGAGTGGACTTGCAAAGCGTTTGGTTCCAGGACACTGGACTGAAAAAACTGGCTTGCAGTTAAAGGACCTTCCAGGACAACCCTTTGGAAATGACTGTGGCATATTTATGCTAATGTATGCCTTGTACATCGTCCTGGATGCACCCTTTGACTTTTCAGTTAACGACATGGCATTGCTCCGGAAATGGTGGTGTGTGATGCTCATGGAGAATTTCGCACTCGAAGGacatggAAAACGCTTCGCACACTGGACCGAGGAATCCAAAGCCCTCCTCAGAGATGACTTGGAGCCAGTGTTTAGGTTAAAAAAGCACCGTCACAGCAAAAGTCTCCAGGAATCTGCAGGGGTGACAGAAGATGGTCCTGAAACACTGGATCCTGTTGGGGTGTCTGAACATGAGGAACCACCTCAGAATAAGATTGTCAAGGACATGCAGGAGGCCATTTCTTGGATTGGACAAAATGAACATGTCTTCAAAGAGGTCGTGCAGACACCGGATTTCCTTCAGTTGGGAGAAGAGGATGCTGAAGAGGCACTGACCAGACTGAGGTTGTTGGACAGCATAGTTGAACAAGAAGAGAGGGATTACATCCAGGCCCCATTTACATTTAGATTTGGCAATCAAATGGACATGGAGCTGTTTCTGAGGGAAATGGTTGATACCAGGAAGCTGCATGTATATACTGTTTTGTAGTGTTCATGTAAATAgatcagttttattgtcaaaaTTGTGTAAATAGAT

Function

GO:

id name namespace
GO:0008237 metallopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670970.1 True 3357 mRNA 0.43 19 263730 269522

Neighbor

gene id symbol gene type direction distance location
LOC111192720 LOC108425021 coding upstream 132092 122069 ~ 131638 (+)
ajap1 ajap1 coding downstream 84514 354036 ~ 477296 (+)
LOC103041629 sema3b,LOC107717529,LOC107556489,LOC107669651 coding downstream 1145752 1415274 ~ 1461698 (+)
pym1 pym1,LOC102777374 coding downstream 1491290 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 1503397 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 1730052 1999574 ~ 2001170 (+)
G48583 NA non-coding upstream 46229 216847 ~ 217501 (+)
G48580 NA non-coding upstream 51020 212399 ~ 212710 (+)
G48579 NA non-coding upstream 53443 210054 ~ 210287 (+)
G48558 NA non-coding upstream 112271 150934 ~ 151459 (+)
G48555 NA non-coding upstream 113298 84774 ~ 150432 (+)
G48589 NA non-coding downstream 1513 271035 ~ 271342 (+)
G48596 NA non-coding downstream 87811 357333 ~ 357775 (+)
G48608 NA non-coding downstream 168076 437598 ~ 584273 (+)
G48610 NA non-coding downstream 180524 450046 ~ 471659 (+)
G48594 NA non-coding downstream 286268 555790 ~ 559237 (+)
G48714 NA other downstream 538633 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 2713324 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 3930417 4199939 ~ 4239873 (+)
G49475 NA other downstream 3975006 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 5349637 5619159 ~ 5627452 (+)

Expression


Co-expression Network