bcar3 (bcar3)


Basic Information

Item Value
gene id bcar3
gene name bcar3
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4393701 ~ 4519665 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670972.1
gagtaaggcTCCTCAGTAGAACAGTAGATGGTGAgcagtggagtgtgtgtgtgtgtgtgtgtgtgaagaagcTGAAAGTTTTGAGACGCAGGTCTTGTGGACACTTGGAAGTTTCAGCACTAGTTTTTAACCATGTCTGttactactctactactactcctactacACTGAGGCATTCTTACGccactgctactgctactgtgtgtgtgttacctgggATACTACAGCTACAGTCTACTCTCGAACAGAATTAAGGATGATGGCGGAGGGGAGGTTCGCCAGCCTGCCCAGGAACCTGCACATGGGCCGGCAGTGCCCGCTCGCCTCCTCCATGGACCTTCTGAGCTCCAGGCCTGCAGTGGCGGAGACGCCTCCTCCCGGATACCACAGCGTCTCCATCCACGGCACCATGCCCCGGAAGAAGAGAGGGGGCGGGGCCGTCACCCGGCCGTGGGAGATGTGCGGGTCTCTGCCGTACCCCGGCCGCGCCCGTCTGCCCTCGTCTCCTCGCATACACAACGTCATAGAGGAGCACCAGCCTTTCCACGTGCTCAGAGAGGACACCTCAGCTCACAGGGACGCTGGAGGGATGGACCCGGCCATGGAGTACGTCAAGTTCTCCCGGGAAAAGTATATCATGGATGGAGCTCCGGAGAAGCTGCGCagggagctggaggaggaactCAAGCAGTGCGGAGAGGAACCACGGAGCCACGCCTGGTACCACGGCGCCATCCCCAGACAGGTGGCTGAGAACCTGGTCCAGCGCGACGGAGACTTCCTGATCCGAGACTCGCTCTCCAGCCCGGGGAACTACGTCCTGACCTGCCAGTGGAAGAACAGCCCCCAGCACTTCAAGATCAACAAGCAGGTAGTGGCCATGAACGAGGCGTACTCGCGGGTGCAGTTCCTGTTCGAGAAGGAGGGCTTCGACAGCGTTCCCGCGCTGGTCAGGTACTACGTCGGCAATCGGCAGCCCGTCTCCGAGGTGGTGGGGGCCATCATCTTCCAGCCCATCAACCGGGCCCTGCCGCTGCGGTGCCTGGAGGAGAAGTACGGCGTGGGCTCCATACGAGTGGAGGCCAGCCACCGAGAGAGGAAGAACCAGAGCTCCAAGCGTCTGAGCCTGAACATCATGAACGGACACGTTCCAGATCACACCCTCGGCCGTGGGAACCTCCTCAGAATGCATCTTCTTTGGCTTCCAGGCTCCAGACCGCAGGCTCCAGCCCACCATATGGAGACACGGTCCTGCTCCAAGTCTCCAGTGTTCAGGACTGGCAGCGAGCCTGCCCTCAGCCCCACGGTTCCTCGCAGGATGGCCTTCGAGACCCAGCCGGGTGAAGCCATCCGGGGCTCTGACAGCCAACTGTGCCCCAAGCCGCCCCCTAAACCCAGCAAAGTGCCCTCTTCGAGGATTCCTCGCTCTCCACGCCTGCAGCCCCTCGCTCCCCAAGCTCCCCAGGTACCTCCGGTCCCTCCGGTGAAGCCCCAGAAGCAGCGACCTTCCCCCaatcagcatcagcaccagcaTCACCAGCAGTCAACCACCCTGACCAGCCCAGAGCTGAGCTACTGTGAACTGAGCCCCTGCAGCCCAGCCGAATGGACTGCCATGGAAAAGatcagctgccttcaggtcaacGCTAACAACGGCTACGTAGAACGATTGAAGACGGACAACGAGGAGCAATGGAGGAACGGTGGGATCACCAAACTGGACCGCAGCTCCTACCACCATGCTATCGAGGCCCTGGAGGACGGCAGCGAGGAAGAAGACGAGGCGGAGGACAGAGAAGACAGACTGCTGGACATAGAGACGGTGGAAAAAGAGCAGCTGAAAGGATACCGGAGACCTGTGTTTGAAACCGTTTCCGCGTTTAAACCAGCAGAAACTGACTTCAGGCTTCTTCCGTCAGAGAATAAACCCCTGGAGATGTCCGTGCTGAAGAAAGCCAAAGAACTGCTGGTCAGTCAGGACCCCAAGACCATCGCCAAGCACATGCTGAGAGCGGACTGCGAGGTTGCCAGGACTCTGAACGTTTCTGAGGAGATGAAAGCTCAGATGGGTGTGACCTCTGGACTGGAGCTGGTGACCCTTCCTCATGGAAGGCAACTCCGTCAGGATCTCTTGGAAAGGCATAACACCATGGCGATCGGTGTAGCCGTGGATATTCTGGGATGTACAGGCAGCCTGGAGGAGCGAGCGGCCACACTGAACCGGATCATACTGGTGGCCCTGGAGCTGAAAGACTCTATGGGGGATCTTTATGCCTTTTCCTCCATAATGAAAGCTCTGGACATGCCTCAGATCACACGCCTGGATCACACGTGGACCACGTTACGCAGGAAGTACACGCAGACCGCCATCATTTACGAGAAATCGCTCAAGCCCTTCTATAAAGGCCTGTATGAAGGCAGTGCAGAGGTTCCTCTCAGCAGTGCCACTGTGCCCCTGCTGATGCCCCTCCTCACCCTGATGGAAAGACCTGCAGTCGCCTTCGAGGGCACGGAGCTGTGGGAAAGCAGCGACCAGGGCTGTGAGATCATGCTGCGCCACCTGGAGGAGGCCCGGGCTGTTGCACGAAACGCTGACACCTACTCCTACAACGCTCAGCGGGTCCTGCAGGatttCCGTCCAAACGAGGACATGTTGGAGATCCTGAAGACGGATTTCCAACTGCGGCTGCTGTGGGGAAGCAGAGGAGCTGCTGTGAATCAGATGGAGCGATACGACAAGTTCAAACTcatccttacagcactttccaGAAAATTAGAACCACCCGTCAAACACACTGAACTCTGAGCTGAGAGAGATGCTTTCCTCGAAAAATCTCCTGAACCTCAACCACGGACTGGACAAGGTGGTgtggacataaaaaaaaaaaaagaggacatgcattttttttttgtctcctcAAAAGGACGATGCAAAACCACATACTGCACACATTTACAGAGGCGTGGCTGTGGTGGAAGAAGAAGAGGGTACTGGAGTAAAGACGAACTTTCAGGACTGCTTTGTGGTTTTGAGGACCTTCCAGAATCACAAAGGTTATCTGTCTATAAAGACTTGACGCATTTCTGTACACACCTTATATTTGAAATAtacagggttggacaatgaaactgaaacacctgtcattttagtgtgggagatttcatcatggttaaattggagcatcct

Function

symbol description
bcar3 Predicted to enable guanyl-nucleotide exchange factor activity and phosphotyrosine residue binding activity. Predicted to be involved in positive regulation of peptidyl-serine phosphorylation. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human BCAR3 (BCAR3 adaptor protein, NSP family member).

NR:

description
PREDICTED: breast cancer anti-estrogen resistance protein 3 isoform X1

GO: NA

KEGG:

id description
K23688 BCAR3, SH2D3B; breast cancer anti-estrogen resistance protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670972.1 True 3187 mRNA 0.56 11 4393701 4519665

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4,LOC107603279 coding upstream 198987 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding upstream 351999 4020453 ~ 4041702 (+)
dmrta2 dmrta2,LOC107578325 coding upstream 1217942 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 1476270 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 1517273 2828935 ~ 2876428 (+)
pdpn NA coding downstream 370043 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 410879 4930544 ~ 4943083 (+)
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding downstream 434612 4954277 ~ 4993901 (+)
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding downstream 681365 5201030 ~ 5210826 (+)
ahcyl1 ahcyl1,LOC107679038,LOC107591817,LOC107668032,LOC107731197 coding downstream 693739 5213404 ~ 5258615 (+)
LOC111192750 NA non-coding upstream 28122 4330195 ~ 4365579 (+)
G49571 mrpl55 non-coding upstream 96134 4294830 ~ 4297567 (+)
G49460 NA non-coding upstream 175367 4113712 ~ 4218334 (+)
G49399 NA non-coding upstream 337940 4042778 ~ 4055761 (+)
G49397 NA non-coding upstream 340826 3966593 ~ 4052875 (+)
G49587 fnbp1l,LOC107757999,LOC107599010 non-coding downstream 6493 4526158 ~ 4632053 (+)
G49606 NA non-coding downstream 118872 4638537 ~ 4641062 (+)
G49615 abl2 non-coding downstream 135089 4654754 ~ 4658061 (+)
G49613 NA non-coding downstream 205691 4725356 ~ 4755688 (+)
G49646 NA non-coding downstream 269560 4789225 ~ 4790020 (+)
G49475 NA other upstream 147474 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 153828 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 1241651 2982846 ~ 3152050 (+)
G48714 NA other upstream 3582436 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 1099494 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 1257387 5777052 ~ 5789265 (+)
G50063 NA other downstream 1851855 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 2343691 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 2464525 6984190 ~ 6984261 (+)

Expression


Co-expression Network