LOC103035560


Basic Information

Item Value
gene id LOC103035560
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6941690 ~ 6960632 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670977.1
ATGGCAGGGGGAGGCTCGCTGCCCCTGCCCGAGTCTCCAGagcctccagactctgctctccAGCCTCTTCACacaggcagagaagaagaaggaggaggaggaggaggaggagaggcagcagagcagagagatggagacTCCAACTTCGAGAACCCAGAGATCGGCACCTACAACTACACCCAGCCGCCGACACAGCCGCCCACAGCCCAGCCAGCGGACCCGCCAGCTGCCCGGGCTCTGTATAAGGCGCTGTGGAGTTTCCAGGGCCGCGCCGTGGACGAGCTCTCCTTCCAGACTGGAGACTCGTTTAGGATGCTGCAGCAGGAGGGAGAGTGGTGTCGGGTGGAGAAGATCAGCCCGCAGGGACTCATACAGGCTGAGGGCTTCGTGCCCTCCAACTACCTGGCAAAAGAGCAGACCCTGGAGGAACAACCatggtATTTTGGGTCACTGAATCGCCTGGAGACCCAGAAACTGCTTTTGGCCGCAGGTAACAAGGTCGGTGCATTTCTGCTGCGACGCAGTGAAAGGGATGAGGTGGGCTGTGTGCTGTCAGTTCGACTAAGCGATAAGGAATTGAAGCACTTTAAAGTTCATGAGGATGAGGAGGGTTTCTATGTGGACCCTGATTCCACTTTCCCCGGACTGGAGCAGTTAGTGGAGCATTATAAAAGCCATCCTCTGAGCTCCGGCACCCTCCTCGGAGAGCCTTGCACACGGCCAGAGCCGAAGCCACAGGACCTGTCCCACAATACTGTGGACGACTGGGAGCTGCCCAAGGAGGAGTTCGCCCTGGAGGAACAGCTGGGGTCTGGATTCTTCGCTGATGTTTACCGCGGCACCTGGAAAGGCATGGTCAAGGTGGCTGTTAAGATCCTCAAAAATAATGACTCGCTCGACCACAGGGAGTTCCAGCTGGAGACTCAGATGCTAAAGAAGCTCCGACACAGACACCTCATAACTCTGTTTGCCATCTGCACCACCAATGTCCCCTACTACATCATCACTGAGCTCATGGAGAAGGGCAACCTGCTGAATGTCTTGCGAGGTCAGGAGGGCCGCAACTTAGAACCGCATGCTCTGACAGATATGGCGAGCCAGGTGGCTGATGGGATGGCATATCTAGAGGAGAAAAACAGCATCCACAGAGACCTGGCAGCACGCAATGTTCTGGTGGGGGAGGACAACCTCTGCAAAGTGGCTGATTTTGGCCTGGCACGGGTCATCAAGGAGCCGTTTTACTTGTCTGAAGAAAAGAAGATTCCATATAAATGGAGCGCTCCTGAGGCCATCAGCCATGGCCGATTCTCCAACAAATCTGATGTGTGGTCTTTCGGCATACTCCTCTATGAAATCTTCACTTACGGTGGATCTCCTTATCCAAGCCACAACAACCATGAAGTGTTCTACCTGATCTCATCTGGATACAGGATGCCCGCCCCTCCCAAATGCCCACCTCACATTTATGACCTCATGCTGAAGTGCTGGAGAGAATCAGCAGAGGAGAGACCCGACTTCAGTGAAGTGCTGGATTATTTAGAGAATGTGAGCCATTACTGGACTGTGAGCGGCAACAACTGTTCAGATCCAGCAGAGGGCAGTAAGATCGAGGGGAGCAGAGAGGAAAGTGTGGATCAGCCTGAGTGAACAGTACAAAAAAAGACTGCAGAATAGATTTGATGGATGCTCTTGATGTAGCAGTTATTTTTCCTTTAGGATTTATTAAAgcataatacataaataatttatatgtatatatgtaataagCACTAAGCCATATCTATACTTTCCTATTCTATATTTGTAACTTTTTTGACATGCTGTGAATTTGGCTGTTTTActttgcattttaaaatatcgGTTTTATGGTCAATAGACCAATCTCCAATAAAAGTCCTTCTTCTCCTATAAACTGGCCTATACAGTTACAAGGTAAGCAGCATACACTATGTATATATAGAAAGAAAATTGAATATTAATTTCTTTATAATTATCCTAACACAAAGTATATACAGCATCTATAGccaacaatattattattttgaatattattcaaaatctctatttttttaacaatatgtatgtttatgtttgctctgaatgtgtgtgcgtgtgtgtgtgtgtttggatatCCACTCTATTGTAGCTTTATTAATTGCATTTTGTTCCAACAGTATGTAAAAATGTTGGTATTTGGTATTCTATAACACGTCTGCAATTAACATCCATACATTTGGATTTATTGCTTTTTCATttgttaaatgtatatatatttgcatttaacAATTCAAATCAGATCACTAATCTATTCAGCACAACATTAACTTTTCAGATAATGGGAAAACTTTTCCTCATCTCAGTTATTgaggcaaaaatcagatttctaCTGAAGCATATGATTTTTGCGCGCTTTTAAATATCCTGTTTTGTAGGAAGTCTGGCTTTTGACCTACATAGGTTCACTTCACTGGCATAAATATAGATCTCTGTTTTTATGGTTTCTTACAGTTTGCAACACTGCCCTTCATACAGTTTGTCCTATTTAAGAGCACGtactgtctgaaaaaaaaactgatcagaTTACATTTCATCAGACTTTTGGGCTTAAATCCAATCTAAGAAATCAGAGTatatgctgtttacatgaccATGAAATAACTGCAGAAATCTGATTATGATAAGATTATTGAGTTCATGTAAACACACCCAtcgttagattttttttttgtaaattacacTAACAgatgacgtttttttttgttttgtttaaagatttttaatgaCTTTGACATAATGCAAAATAAAGAGACACTCATGTAAAAATACACTGCTgaataactaaaaacaaagaAGTACTAATAGAGATAAACCTTTAGCAGTCCCATGATGGGGAAATTCACAATGACGAATTTGAGGA

Function

GO: NA

KEGG:

id description
K08894 PTK6, BRK; protein tyrosine kinase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670977.1 True 2917 mRNA 0.44 9 6941690 6960632

Neighbor

gene id symbol gene type direction distance location
c6h6orf226 NA coding upstream 141325 6798654 ~ 6800365 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding upstream 170629 6748399 ~ 6771061 (+)
was was coding upstream 339948 6590291 ~ 6601742 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding upstream 354345 6546569 ~ 6587345 (+)
LOC103043236 NA coding upstream 469602 6461543 ~ 6472088 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding downstream 66017 7026649 ~ 7039636 (+)
LOC103034603 NA coding downstream 163216 7123848 ~ 7130581 (+)
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding downstream 281493 7242125 ~ 7336833 (+)
LOC103033322 LOC108437580,LOC107731173,LOC108266008 coding downstream 390037 7350669 ~ 7485744 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding downstream 595725 7556357 ~ 7571558 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 149993 6788872 ~ 6791697 (+)
G50195 suv39h1 non-coding upstream 153487 6782888 ~ 6788203 (+)
G50188 NA non-coding upstream 164791 6773399 ~ 6776899 (+)
G50172 NA non-coding upstream 211134 6697103 ~ 6730556 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding upstream 437359 6500149 ~ 6504331 (+)
G50224 LOC108412504 non-coding downstream 24904 6985536 ~ 6996194 (+)
G50227 NA non-coding downstream 42457 7003089 ~ 7082346 (+)
G50253 NA non-coding downstream 106243 7066875 ~ 7072486 (+)
G50258 NA non-coding downstream 116601 7077233 ~ 7080141 (+)
G50439 NA non-coding downstream 978969 7939601 ~ 7942748 (+)
G50063 NA other upstream 564985 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1152425 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1314238 5619159 ~ 5627452 (+)
G49475 NA other upstream 2695463 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2701817 4199939 ~ 4239873 (+)
trnae-cuc NA other downstream 23558 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 770052 7730684 ~ 7884058 (+)
G50568 NA other downstream 1246710 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1309616 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 1382308 8342940 ~ 8344514 (+)

Expression


Co-expression Network