sema6a (sema6a,LOC106585847,LOC106580184)



Basic Information


Item Value
gene id sema6a
gene name sema6a,LOC106585847,LOC106580184
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9085038 ~ 9203129 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022670979.1
tcggcTCTGCGCTCTGGCTCCTCCCAGTGTGTAGCGGGTGACAGCTGGGAGAGCTGCGTGCTGGTGAGAAGCCTTCATCTCTAAATAGGATGAGCAGCCGCTTTGGTGCTCCGGAGCTACGAATGGTTCGGACCGCTTGGCTGATCAGTTCTGCTGGAGCCGCACTTTGTTTCCGCGCGCAGTTCGCTCTCACGGATTGTTTCGATACTTGGATTTCCAATGGATATTCCGCTGTGAGAGAGGGGCGCATTGACACGGCTGAAGTAAAGTAGTAATCAGGAGCCAGTAGGCAGTGCAACAATGAGGTCGGAGGCCTTGTTGCTGTATTTCACCCTGCTGCAGATAGCTGGGGCCGGCTTCCCAGAGGATTCAGAGCCAATCAGTATTTCACATGGCAACTATACAAAACAATACCCAGTGTTCGTCGGCCACAAACCAGGAAGGAACAGCACACAGCGGCACAAGTTGGACATCCAGCTGATCGTCATAACCAACCGGACTCTATACGTTGCTGCGAGGGATCACGTATATACAGTGGACATCGACACAGCCAACAGCGAAGAGATCTTTTTCAGCAAGAAACTGACGTGGAAGTCCAGGCAAGCGGATGTGGACACTTGTAGAATGAAAGGGAAGCATAAGGATGAGTGCCACAATTTCATCAAGGTCCTTCTCCAGCAAAACGATGACACCCTGTTTGTGTGCGGAACGAACGCTTTCAACCCTTCCTGTCGAACGTACAAGaCAGACACCCTGGAAGCCCTAGGAGAGGAGATTAGCGGAATGGCCCGATGCCCATATGATGCCAAGCATGCCAATGTTGCCTTGTTTGCTGATGGAAAGCTGTACTCTGCCACGGTCACCGACTTTCTGGCTATCGACGCTGTCATTTATCGCAGTCTAGGAGACAGTCCGACTCTACGAACAGTAAAGCACGATTCAAAGTGGCTAAAAGAGCCCTATTTTGTCCAGGCGGTGGATTACGGAGACTTCATTTACTTTTTCTATCGGGAAATCGCCATGGAGTACAACAGCATGGGAAAGGTGGTTTTCCCCCGAGTGGCTCGGGTGTGTAAGAACGATCGCGGCGGTTCACAGCGTGTCCTGGAGAAACAGTGGACGTCTTTCCTAAAGGCCCGTCTGAACTGCTCCATCCCCGGAGACTCGCACTTCTACTTCAACATCCTGCAGGCTGTCACTGACGTCATCCATATTAATGGGCGTGATGTTGTCATGGCAACCTTCTCCACGCCGTACAACAGCATTCCAGGCTCGGCCGTCTGTGCCTATGACATGGCCGACATCGCTACAGCCTTCACGGGCCGTTTCAAAGAGCAGAAGTCCCCTGATTCCACCTGGACCCCGGTGCCCGAGGAGAAAGTTCCCAAGCCCAGGCCAGGCTGCTGTGCTGGGACACCATCAGTGGAAAAGTACAAAGTGTCCAACGAATTCCCAGACGACACGTTGAACTTCATCAAGATGCATCCTCTGATGGAAGAGGCAGTGCCCTCTATCGCCAACCGCCCTTGGTTTCTCAAGACTATGGTTCGATACCGGCTCACGCGCATAGCAGTGGATAATGCCGCCGGGCCCTATCGCAACCACACCGTCGTTTTCCTGGGCTCAGAAAGAGGCATCATCCTCAAGTTCCTGGCTAAAATGAACAGCGGCTTCCTGAACGACAGCCTCTTCCTGGAGGAGCTGAGCATCTACAACCCCGAGAAGTGCAGCATTGACGGCGTAGACGATAAACGCATAATCAACATGCAGATCGACAGCAAAAGTCACGCTCTGTTTGTAGCCTTCACGTCCTGTGTAGTCAAGGTTCCACTATCGCGGTGTGAGAGACATGGGAGATGCAAAAAGTCCTGCATCGCCTCCAGAGACCCCTACTGTGGCTGGCTGTCGGAGGGAGCCTGCAGAGAAGTCGTCACCAGCACAAAGTACGTTGATCCACCCTTTTTCACCAGCTGCTGCAGCCACAACTCCTTTGTGGCTCTAAATGGCCGTTCCACCTCCACCTTTCTCAGCACTGTCCAGCCCGCCGCCAGCGGGCCACTGGGACAGGACCGCATGGTCGAGTCCAAGGACCCGCCCCTGCCCACCGATAAGAGGGACCCTTATATCGCGGTGCCCTCTCTAACCCAGCAGGAGTCCACTGGAGTGATTCGTGAGAGCTTCCAGAAAGGACGGGATCAGATGGTCCCCATCACTCTGCTGGCCGTCGCTGTGATCCTGGCCTTTGTCATGGGTGCCGTCTTCTCAGGAATCATAGTCTACTGCGTGTGTGACCACCACCGCCGACGCGACTTCGAGATCCCCGGACGCAAGGATAAGGACTCTGTCAACTCCAGACGAGGCTCCATGAACAGTGTCACCAAGCTGACAGGCCTATTCGAGACTCAAGCAAAAGATGGCCGCCCTGAGGCCATCCTAGCACCCTTGATGCACAATGGACGCCTGACCAATGGCAAGATGCTCATCAAGGCCGAACAGCACCACCTGGACCTGGCCGCTCTGCCGACTCCAGAGTCCACCCCGATGCAGCCACGCCGCAAACCAAGCCGGGGCAGCCGCGAATGGGAGCGAAACCAGAACTTGATCAACGCCTGTGCCAAAGACCTAGCCTCAATGGGCTCACCAGTCATCCCAACTGACCTGCCACTGAGGGCGTCGCCAGGCCACATCCCTAGTGTGGTGGTGCTGCCTTTACCTCAGCACCAGCAGGCCTATCAGCACGAGTACGTCGAGCAGCCACATTTGCCTGATGACCAAGCCGCCACTCTGGAGTACAAAACCATGAAGAGTCCCTGCCACAGTCTTAGCATGTCGGACAGTGATGGGATACCGCCTCGAGTCCCACAGCGGGAGGCCTCTTTGGCCGCTGTGGTGCCACCAGCCGTCCCACAAATGGGCAAGAGGCTGGACATGTACAGTCGTGGGTATCCTGCAAGCTCCagcaagcagaagaagcagcACAACACCAATtcctccaactcatcccatttGTCGAGAAACCACAGCTTCGCCAGGGCTGAAACTCCGCCACCGGCCCCACAAAGGGTGGACTCCATGCATCTCGGCTCCCCTCCACCCATGGGCCTTACGCGGCACTCCAGCCTGAGCTCCTACGGCTCACTGCCCCGctgcagcagctccagcaggcACCTCAAGCCCGATGTTCCACCTAAACCCTCGCAAGTCTCCCTCTCCTCAAAAGTCAAGTCCAGTGACTTATGCACATAAAGCAGCGTAAGGGGAAAACGGGGGATACACAAAGTGCATCTGCGTTGTACAGCTGTGTACAGGAAATGCAactcactgtttttttaagaaaacaaacaacaacaaaaaaatgtttttcatataTATGGAGGTGTCGAGCTCAGGCTGGTAATGTCCGGATTCCCGGACGGCAGGAGATGGAACACCTGCTACTGAAAAGAGAAGGACACTCTCTTAAATCTTTCATCGCCGAGCCACAACGTTtagccatatttttttttgtcgtttttgttggttttttttccagaaatgacAGTATGTCAGTCTGAGGACACAGCCACGTTGcaactgttgttttgttctcttAACGGACTGCCAAAAGCACATCACGGAGAGGAGTGTAATTGTATAGTTCGGTAGCTGGGACATGCCCCAGTTCAAAGCACTTGGACGCAGCAAGCTCAGACTGGAACAACTGCTGCTTTACAATGGAAAACTGTGAAATAAGaataagtaagaaaaaaaaaaaacagaacgagaaaaaaagaagattcTCAACGCCTCTCAGTGTTGCAGCTACTGGACACAGCAATCAAGTTCTGCCTTTTGCAAGGTCTGAAAAATCGTCTACTGTAACTGGTGACTGCTTAACCCGTGACTGTTAGTACTAATAGTtggttgtatttatttttaataaagtgctTTCAAAGAAAGACTGACTCTTTTTAGgctcagacagagagagagagagagagagagaagagatctttttaattttaattaattgtgtGAAATTATTTAAAGTCATTCAACTGGAGCCAGTACAACTTTTTTCTTGCTTCTTGTGGAAAAAAAGATCCTCTAACTTCTTTGGGATGTTGCTGAGTGAACTCGGAGAGAATTAAGTTCTCTGCACGGAGGAGATATTTATTGAACTGTGCCAGAGGAGCTCGGGAAGGGCTCTGAAAATAGCAGCACCCTAAGATGATAAGAACCTCccttttgtgaaataaaaaggaTAGAAAATgaaagacaggaaaaaaaaaaaaaataatcctcaAACTGGAACTCCTAGATTGCACCCTCACCTTTCCATGGGCATCTCCATTCAGCACTGTGGATCGTGTCAGTAACTTCTACTCCTACAGCTTCACCGAGTGCCATTCTGATTCACGTTTTTGCATGAAAGTGTGCAAAGactgagaagaagaagaagaagaagaagaagaagaggaagaacaaaaaaaagcccCAGATAATCTGCACTTAAAACATGCAGCGAGACAAATGGGTGGATGTTGGCGCACGACCAGCAGGGGTGTGGGGGGGGTGCTtcgtttagttttttattttattttttatttggcagGTATCAAAACGTATCAATTTTACAGTCTCTTCTTCACACAGGCCCTTTCATTGTATTACATCTGTTTGGTAgcctgctttttttcttttttttttttttggtttcttcCACGTGTAAATTTGTGCCTTACACCCCTGAGTAGTGAAGAGTTTGTTAGCTGTTAACTGTTACCTAGTAGTTCTTATTGATCTGATTATGTATTTCCCTCATTTGATGAAAAAGCAATTAAAGAATGTAGGTGTTCTTGTTGTTCATTCTGCTCCCTTTGGAAATATTGGGTGGGAGGGGCTAACCACAAACTTTGTAATTGATTTATTTCTGATTGTGCCAATGAAAACGCTTGAAACGCCCTTTTGTCGTGTTGGCGGTGTGTCGTCCATgctggttttgttttgttttgttttctgtttttttattttttagagtcttgatgtttttatttgacttttatCTGACCACATTCTAGGTTAACCGGTGTGTATTCCTGAAAAGGCCTCCTTGGTTCTGGTACAATGCAATAATATCTAATAATAGCTAACAGCTAATTCAGCTACAGAACTAATGCCCCCCTTAAAACACACCAGGGTCCTAATGCTCATTATAAAACTCAGTTTCTAGGCAGCAAATACAGGCTGGCTCCTGTGAAGAGAAGCACTTGAATAATATTAGGGAACATATTAATGCTTTCGATGTTTATGACAGATGCCGACTAATAAAATTCCTTAACTTGTTAAATCGTTTTGCGTAAAAAGACGGGCTTTTAATTGTCTGATTTGGGTATTTAactgtttaatatgttttatggCTCTCACCTCTTCCCCTAAATGAACCCAGCGCTCCTCTGTTGTAGTCTCTGTAGGCCAGTGAGTTTTCTACTTCAACTTTCCCACTGGGGTTCCttaaaaaacctaaaaaagcAGCTCATCAATCAAACAGATCCCCACCCTGGCCTTCGGGCGTGTGGTTACTTGGACTAACGTGTACATAGATGCTTGTAGGGTCAGATTGCATTGGCCTGTCTGGGGTCAGGTTAGGAGTAGGACCGGGACACTCATGCTCACACCTCTTTCTCTGAGTAATGCATCTCTGCCCACGCGTTTTGATGGTGTTCGTGGACAGTGGGCCCTTTGGTGTGCCTTTTGTCTTTCACCCTTTTGCTATACACTGATAGAGGCAAACCAAGTTGGAAATTTTTGAAATCGTTTGAAGTTTGTATGCCTGTAAGATATTGTTCTGTCAcacgttctttttttttcttgccctTCTCCAACCTCCTTAACATCTGATTCACAGATAAATGTATGTTGTAAAGAAATtctctttaataaatgaaaaaagtaataaaaatgttttaaattcttGTCA

Function


symbol description
sema6a Predicted to enable semaphorin receptor binding activity. Acts upstream of or within optic vesicle formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in anterior neural keel; anterior neural rod; nervous system; optic vesicle; and presumptive neural retina. Orthologous to human SEMA6A (semaphorin 6A).

NR:

description
PREDICTED: semaphorin-6A isoform X1

GO: NA

KEGG:

id description
K06842 SEMA6; semaphorin 6

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022670979.1 True 5959 mRNA 0.48 18 9085038 9203129

Neighbor


gene id symbol gene type direction distance location
hsd17b4 hsd17b4 coding upstream 89286 8976218 ~ 8995752 (+)
LOC103034488 LOC108437599 coding upstream 815704 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 822308 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 827086 8254568 ~ 8257952 (+)
LOC103033636 NA coding upstream 840314 8243882 ~ 8244724 (+)
cdo1 cdo1,LOC102791980 coding downstream 123571 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 142509 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 149944 9353073 ~ 9354864 (+)
fem1c fem1c,LOC106580179,LOC107728259 coding downstream 154638 9357767 ~ 9364491 (+)
ccdc112 ccdc112 coding downstream 175997 9379126 ~ 9385691 (+)
LOC107197475 NA non-coding upstream 78392 9004992 ~ 9006646 (+)
G50770 NA non-coding upstream 138666 8945273 ~ 8946372 (+)
G50656 NA non-coding upstream 329029 8755645 ~ 8756009 (+)
G50580 NA non-coding upstream 782128 8302516 ~ 8302910 (+)
G50565 NA non-coding upstream 881619 8202437 ~ 8203419 (+)
G50818 NA non-coding downstream 887 9204016 ~ 9204217 (+)
G50822 NA non-coding downstream 50044 9253173 ~ 9254126 (+)
G50841 ap3s1 non-coding downstream 106131 9309260 ~ 9324163 (+)
G50886 NA non-coding downstream 411399 9614528 ~ 9622057 (+)
G50887 NA non-coding downstream 411474 9614603 ~ 9617381 (+)
G50583 LOC108437602,LOC103398889 other upstream 740524 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 806282 8270248 ~ 8278756 (+)
G50568 NA other upstream 863876 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1200980 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2100777 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 440245 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 920591 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1484756 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2629552 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 2880951 12084080 ~ 12129300 (+)

Expression



Co-expression Network