LOC103041629 (sema3b,LOC107717529,LOC107556489,LOC107669651)


Basic Information

Item Value
gene id LOC103041629
gene name sema3b,LOC107717529,LOC107556489,LOC107669651
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 1415274 ~ 1461698 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022670987.1
caatcagacgAACAACCAGcatcacacctgtacacacctgaagatgatgactgtgatgatgatgatgatgatgacggtgaTGTGTAGCTCATTACTGCTGCTGGGGCTGATCACTGTCAGCGCCTCGTCCAGTGGATCTTCATCATCTGCATCTTCTTCtacctcatcctcatcctcacccAGGATGAAACTTACGTACAAAGAGCTCCAGCAGTTTAATGGTATAAAGCGGTTTGAGTTGGAGCGGTCATGCTGCTTCGGAGCGCTCCTATTGGACGAGGAGAGGGGCCGGCTGTTTGTTGGAGCGCGAAACTTTGTGTTGTCTCTCAGTCTGGACAACATCGCCAAACAAGAACAGAAGatatACTGGCCTGCACCTGTGGAGTGGAGGGAGGAGTGCAACTGGGCAGGAAAAGACATCAATacgGACTGTGTTAACTACGTGAAGGTGCTGCATCACTTTAACCGGACTCACCTGTACGCCTGCGGGACGGGAGCCTTCCACCCTACCTGCGCTTACGTGGAGGTCGGCCAGAAGGTGGAGgatCATGTGTTCCGGATTGACCCGTCTCTAGTGGAGGATGGTAAAGGGAAGAGTCCGTATGACCCTCGACACACACCAGCCTCTGTTCTTATTGGTGATGAGCTGTACTCGGGCGTGGCCACTGACCTGATGGGGCGGGACTTCACAATTTTCCGCAGTCTGGGCCAGAAACCATCAATCCGAACTGAACAGCACGACTCTCGCTGGCTCAacgaGCCGAAGTTCGTCGGAGCGTTTGCGGTTCCAGAAAGTGAGAATCATGATGACGATaaagttttcttcttcttcagagaAACCGCTGTGGAAGCTCAGGGCTTCGGCAAGGTGACCTACGCTCGGATTGGTCAGCTGTGCCGGaatGATATGGGAGAGCGCAGTTTAGTGAACAAGTGGACAACGTTTCTGAAGACTCGACTCGTCTGCTCTGTGCCGGGAAATGACGGCAGCGAAACACACTTCGACGAGCTTAgtaagaaacacacacattacacacacactacacacacactgttaaggGAGTGACCAATTGTGTAAAcgtgtttgtgttttgtgtattgcagtagtgtattcagAGGCTCGGCCGTGTGTCTCTACACTATGAACGATATCCGCCGGGCGTTTCTGGGGCCTTTCGCCCATAAAGAGGGACCCAATTACCAGTGGGTTCCTTACCAGGGTAAAGTTCCTTACCCACGGCCTGGCATGTGTCCCAGTAAGACGTTTGGAAGTTTCGAGTCTACGAAGGGTTTCCCGGATAATGTGATCCAGTTCGCTCGGCATCATCCGCTGATGTTTAACCCCGTAACTCCGCTGGGGAACCGCCCGGTGTTCCTGCGCACCGGCATCCCCTACAGCTTCACACAGATCGCTGTGGACCGGGTCAACGCCGCCGACGGACACTACGACGTCATGTTCATCGGGACAGATGTCGGCACAGTGCTGAAGGTGATCTCTGTGCCGAAGGGAAGCTGGAGCaacacagagctgctgctggaggagctgcaggtcTTTAAGgaCTCCTCATCGATCATCAACATGCAGATCTCCTCTAAACGGCAACAGCTGTATGTAGGTTCTGATACGGGTCTGGCGCAGGTTCCGCTGCACCGCTGCAGTCTGTACGGTAAAGCATGCGCCGAGTGCTGCCTGGCCCGGGACCCGTACTGCGCCTGGGACGGGCACTCCTGCACCCGGTACCTGCCCAACACCAAACGGCGCTTCCGACGGCAGGACGTGAGGAATGGTGATCCGAACACACTCTGTTCAGGAGaGAACCAGAAGCCGCGAGTGGTGGAGAAGAAGCTGTACGCGGTGGAGAGCAGCAGCTCCTTCCTGGAGTGCCTCCCTAAATCCCTGCAGGCTCAGGTCACATGGACCTACCAGAGACACCCCAACAACCCCCGAGAGGAGgtgcgTCTAGACGACCGCGTTCTCCAGACAGACCGAGGTCTGCTGCTGCGCCGCGTTCTGCGTCGAGACGGGGGCGTGTACCAGTGCCACGCCATGGAGCACGGATTCACCCAGACGCTCCTGGGCATCACGCTAGAGGTCGTGCCCTCCTCAAGCCCCTCCCCTTCAGTGCCAAATGCCCACAGCCCCGCCCACAACCAAGGACAGTCCTCCACCAATCAGAAGCTGTGGTACAGGGACTTCATGCAGCTGGTGGATCACCCCAACCTGAGCACGGTAGATCAGATCTGCGAGCAGGTGTGGTCACGGAAGCACGGCCAATCGGCTAAGGGCCAGCCGGATCCGGCCAACGAGGCTCCGCCCATCGACCCCCTACACTCCACCCACAAAAAGTGGAAGCATCTGAAGGAGGTGAGGAAGGGGCGGAACCGCAGAACGCACGATGGAAGACCCTCCCCCCGAGCGCCTCGGAGCGCTGGAGAGTaacgagagagaggagagaaagagagagcgacgaaaagagagagagagagactgagaaagaaagagagaaagaaagagagagagatcactgGAGACAGACAATTCTGCACATTACATCTCATTTAGTGACTATTTatctatcaatcaatcatcTAACACAACTCTACGTTAGATCATAACTCCATTAGATCATAACTCCATCTTCCTTCTGCCCAGTTATTGCCCCACCCTAAACACTCTACTGCCCCAATGACCCCACTTACCCCACCGATGACTGTATACACAGTATACCAGTGGACAGTATGATCTAAAAAATGACATCTTTAGGATTCTGACGCCCTCTAGTGGCCCAAACCTTTAAACAAAGTCCCAAAGTGACACAATGAGCCCcttcttacaccctgcacaaggtgtgtctcgatgctcattgctatcttacaccctgcctagagtctatttttttacgtc

Function

symbol description
sema3b Enables neuropilin binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Predicted to be integral component of plasma membrane. Orthologous to human SEMA3B (semaphorin 3B).

NR:

description
PREDICTED: semaphorin-3B

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022670987.1 True 2905 mRNA 0.54 17 1415274 1461698

Neighbor

gene id symbol gene type direction distance location
ajap1 ajap1 coding upstream 937978 354036 ~ 477296 (+)
LOC111192744 NA coding upstream 1145752 263730 ~ 269522 (+)
LOC111192720 LOC108425021 coding upstream 1283636 122069 ~ 131638 (+)
pym1 pym1,LOC102777374 coding downstream 299114 1760812 ~ 1764075 (+)
LOC103027674 LOC108425035 coding downstream 311221 1772919 ~ 1786362 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding downstream 537876 1999574 ~ 2001170 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding downstream 898224 2359922 ~ 2362224 (+)
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding downstream 1003895 2465593 ~ 2474573 (+)
G48803 NA non-coding upstream 19651 1392909 ~ 1395623 (+)
G48781 NA non-coding upstream 172740 1191438 ~ 1242534 (+)
G48760 NA non-coding upstream 344394 973293 ~ 1070880 (+)
G48754 NA non-coding upstream 490076 924742 ~ 925198 (+)
G48730 NA non-coding upstream 590597 824447 ~ 824677 (+)
G48772 NA non-coding downstream 29623 1491321 ~ 1506286 (+)
G48815 NA non-coding downstream 144777 1606475 ~ 1611232 (+)
G48822 NA non-coding downstream 178281 1639979 ~ 1727282 (+)
G48857 NA non-coding downstream 342059 1803757 ~ 1904244 (+)
G48868 NA non-coding downstream 373620 1835318 ~ 1851766 (+)
G48714 NA other upstream 604009 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 1521148 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 2738241 4199939 ~ 4239873 (+)
G49475 NA other downstream 2782830 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 4157461 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 4315354 5777052 ~ 5789265 (+)

Expression


Co-expression Network