klhl12 (klhl12)


Basic Information

Item Value
gene id klhl12
gene name klhl12
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2478591 ~ 2506196 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671014.1
GTTGCCATCGTGTTGCTGAGGGACGTGAGAGCCctgcattaaaaacatacaGCCGGAGTAACTTCAGCttttaattaactaaataacttaaaaacctCAAACCTCAGCGCGTTCAGCGAGAACTGgggaataatatatatatgctgcaGTATTCAGAGCTAGGGCGCCGGTTCCTGCCTTGTTTTAGTGGTTTTCTGAGCACCGGGCGGAGGTTGAGAGCGTGGCTGGAGTATGAAGCTCTGTGGGCGGCCGCTGCAGCGCTGACTAACCGCTTACAGCCCACGGAGCCCCGGCTCGCCTGGTCTCACTCCtccgctgctgctgttgctgccgACCCGAGTCGAGCTCCATCATCCTGCACTGCCTGTGGACGTGCCGCTCTCCCCCTTCGCCAGTTGCCATGGCGCCCAAAGACATCATGACCAACTCCCATGCCAAGTCCATCTTAAATGCCATGAACGCCTTGAGGAAGAGCAACACGCTGTGTGACATCACGCTGAGGGTGGAGAACACAGATTTCCCCGCCCACCGCATCGTCCTGGCCGCCTGCAGCGACTACTTCTGTGCCATGTTCACCAGTGAGctgGCTGAGAAGGGAAAGTCCTTCGTGGACATTCAGGGTCTCACTGCTTCCACCATGGAGATTCTTCTGGACTTTGTTTACACAGAGACTGTGTTAGTGACTGTGGAGAATGTGCAGGAGCTGCTCCCTGCTGCCTGCCTGCTCCAGCTTAAAGGGGTGAAGAGGGCTTGCTGTGATTTCCTCAACAGCCAACTGGACCCGTCCAACTGCCTGGGCATTCGAGACTTTGCGGAGACTCATAATTGCGTGGACCTGATGCAGGCGGCGGAGCTTTTCTCTCAGAAACATTTCTCTGAGGTGGTGCAGCACGAAGAGTTCATGCTCCTCAGCCAGACTGAAGTGGAAAAGCTCATTAAATGTGATGAGATTCAGGTGGACTCTGAGGAGCCGGTGTTTGAGGCTGtgttaaactgggttaaacACAACCGTAAGGAGCGAGAGCCGTACCTGTCCGACATGCTGGAATACGTACGAATGCCTTTACTCACGCCACGTTACATCACCGACGTTATCGACTCTGAGCCTCTTATCCGCTGCAGTCTGGCCTGTCGGGATCTCGTGGATGAAGCCAAGAAGTTTCACCTGAGGCCTGAGTTACGCAGCGAGATGCAGGGACCTCGAACTCAAGCCAGACTAGgTGCCAAAGAAGTCCTGCTGGTGATTGGTGGGTTTGGCAGTCAGCAGTCCCCAATTGACGTTGTGGAAAAGTATGATCCCAAAACCCAAGAATGGAGTTTTCTGCCTAACATTGCACGTAAGCGGCGTTACGTTGCTACCGTTTCCCTAAACGATCGCGTGTACGTAATCGGAGGCTACGACGGCCGGTCACgtctcagctctgtggagtgtCTGGACTACACAGCGGATGAAGATGGAGTTTGGTACACCGTCGCCACCATGAACGTACGACGAGGCCTGGCAGGAGCAACCACACTCGGAGataTGATTTATGTTGCTGGGGGGTTTGATGGAAGTCGGCGGCACACCAGCATGGAGAGATACGACCCCAACATTGACCAGTGGAGCATGCTGGGAGATATGCAGACTGCCAGAGAGGGGGCGGGACTTGTAGTGGCCAGTGGGCTCATCTACTGTTTAGGTGGCTATGATGGCTTGAACATCCTGAATTCAGTAGAGCGCTATGACCCACACACTGGTCACTGGACCAGCGTCACGCCAATGGCCAACAAGCGTTCTGGTGCAGGGGTGGCTCTGCTAAATGACCACATTTATGTAGTCGGAGGGTTTGATGGCACAGCCCATCTTGCGTCTGTAGAGGTTTACAACATCCGAACAGACTATTGGACGACAGTGGCGCCCATGACCACGCCTCGCTGCTATGTGGGAGCTACAGTACTAAGGGGGCGACTATATGCTATTGCAGGATATGACGGTAACTCCTTGCTGAGCAGTATCGAATGTTACGACCCTGTGCTGGACAGCTGGGAGGTGGTGACCTCCATGGCCACTCAGCGCTGTGACGCCGGGGTCTGCGTGCTGCGGGAGAAGTGAGGGCACGGCTGCTGGACTGCTTTTAAACTCAGTAAGACACGTGGTGGACGAAGCATTTGTGCTGGTGATTGGCAGCTAACATCTGAGACTGATCTGCTACTATGTGCCACGTGTGATTATcgcatggaggagtgggagaACTGGAAACTGCAGATCTGCTGTACTGTACTCATTTCCTCCGTTGGACCTTAGTTCTGTTGCCGTCTGAGATCCGTGTAAAGTGTGTGATGCCCTCGCTGCGTGCGGCATGCTGAGATGTCTTCGCTCTCCATACATGATGACCCTGTGGTTCGGTTACGTGCGCGAGGATGGCGGCGACGTGGTCACGAGTctacaatagtgcaatattttgatctactgctacaaatatatatatatatatataaaaagactgGGAATGCAGAGCAGCATTATATATTAATGCCTGCTTCAGCTGTTGCTGCTATTTGCCTTATTTATTGCCTttacggcaaaaaaaaaa

Function

symbol description
klhl12 Acts upstream of or within Wnt signaling pathway; anterior/posterior pattern specification; and convergent extension involved in axis elongation. Predicted to be located in cytoplasmic vesicle. Predicted to be part of COPII vesicle coat and Cul3-RING ubiquitin ligase complex. Predicted to be active in COPII-coated ER to Golgi transport vesicle. Orthologous to human KLHL12 (kelch like family member 12).

NR:

description
PREDICTED: kelch-like protein 12 isoform X1

GO: NA

KEGG:

id description
K10450 KLHL12, C3IP1; kelch-like protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671014.1 True 2576 mRNA 0.53 12 2478591 2506196

Neighbor

gene id symbol gene type direction distance location
adipor1 adipor1,adipor1b,LOC108425077,LOC107751445,LOC107679819 coding upstream 4018 2465593 ~ 2474573 (+)
LOC103028158 cebpb,LOC103028158,LOC107556312,LOC107669676,LOC107751442,LOC108265421 coding upstream 116367 2359922 ~ 2362224 (+)
LOC103045867 mc3r,LOC103045867,LOC108425022,LOC107751459,LOC107711834,LOC107680356,LOC107669608 coding upstream 477421 1999574 ~ 2001170 (+)
LOC103027674 LOC108425035 coding upstream 692229 1772919 ~ 1786362 (+)
pym1 pym1,LOC102777374 coding upstream 714516 1760812 ~ 1764075 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding downstream 3948 2510144 ~ 2521419 (+)
LOC103026437 LOC108425081 coding downstream 21273 2527469 ~ 2583319 (+)
LOC103035089 NA coding downstream 78349 2584545 ~ 2597636 (+)
LOC103037045 NA coding downstream 93046 2599242 ~ 2602614 (+)
LOC103025499 NA coding downstream 97137 2603333 ~ 2616672 (+)
G49117 NA non-coding upstream 48948 2428120 ~ 2429643 (+)
G49122 NA non-coding upstream 50680 2425130 ~ 2427911 (+)
G49121 NA non-coding upstream 73863 2404515 ~ 2404728 (+)
G49120 NA non-coding upstream 75614 2402683 ~ 2402977 (+)
G49119 NA non-coding upstream 79762 2398482 ~ 2398829 (+)
G49146 NA non-coding downstream 151000 2657196 ~ 3150588 (+)
G49150 NA non-coding downstream 164621 2670817 ~ 2672813 (+)
G49151 NA non-coding downstream 175002 2681198 ~ 2681503 (+)
G49154 NA non-coding downstream 200827 2707023 ~ 2709154 (+)
LOC103026017 NA non-coding downstream 202508 2708704 ~ 2724228 (+)
G48714 NA other upstream 1667326 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 476650 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1693743 4199939 ~ 4239873 (+)
G49475 NA other downstream 1738332 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 3112963 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3270856 5777052 ~ 5789265 (+)

Expression


Co-expression Network