LOC107196890 (osbpl9)


Basic Information

Item Value
gene id LOC107196890
gene name osbpl9
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 2616841 ~ 2661456 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671016.1
gtagtgtagagtgtctCCTCTCGGGCTGTTAGGCTCTTTGCTGTGCTGTGTACTGACTCTCTCCCCCCGCTCGCTCCTCCCACTCCGCGCCTGGTTGGTTAAGTGCAAAGATGGCGTCCATCATGGAGGGGCCGCTGAGCAAGTGGACTAACCTGATGAAGGGCTGGCAGTACCGGTGGTTTGTTCTGGACTATAACGCGGGCCTGCTGTCCTACTACACCTCAAAAGACAAGATGATGCGTGGATCCAGAAGAGGATGTGTCAGACTGAGGGGAGCAGTGATCGGCATCGATGACGAGGACGACAGCACCTTCACCATCACCGTAGACCAGAAGACTTTCCATTTCCAGGCTCGAGACGCTGACGAGCGAGAGAAGTGGATTCACGCTTTAGAGGGAACGATCCTGCGCCACGCCCTCCAGCTACGGGAGGCCGAGACGGCGTTCGTTCCCAGCGTTCAGGACTTCGACAAAAAGCTCGCTGAGGCCGACGCCTACCTGCAGATACTGATTGATCAGCTAAAGCTCTTTGATGAGAAGATAAAAGACTGCAAAGAAGATGAAGCACGTAGAGTAAGTCATTACCACATTATCTTCTCTCATAGACCTCACTTTAAAaagcatacatacatatactataGCATTTGTGTTATACAAGATATATGATCTgtctgtatacag

Function

symbol description
osbpl9 Predicted to enable sterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Orthologous to human OSBPL9 (oxysterol binding protein like 9).

NR:

description
PREDICTED: oxysterol-binding protein-related protein 9 isoform X1

GO:

id name namespace
GO:0006869 lipid transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671016.1 True 680 mRNA 0.51 6 2616841 2661456

Neighbor

gene id symbol gene type direction distance location
LOC103025499 NA coding upstream 169 2603333 ~ 2616672 (+)
LOC103037045 NA coding upstream 14227 2599242 ~ 2602614 (+)
LOC103035089 NA coding upstream 19205 2584545 ~ 2597636 (+)
LOC103026437 LOC108425081 coding upstream 33522 2527469 ~ 2583319 (+)
LOC103031418 tuba8l,LOC106567204,LOC105022333,LOC106572477,LOC103031418,LOC108265838,LOC108425079,LOC107711852,LOC107679810,LOC107594520 coding upstream 95422 2510144 ~ 2521419 (+)
osbpl9 osbpl9,LOC107657891 coding downstream 12760 2674216 ~ 2692784 (+)
tor3a tor3a,LOC108266023,LOC107548256,LOC107699619,LOC107743897,LOC107657890 coding downstream 64029 2725485 ~ 2734540 (+)
LOC103024869 calr,LOC108265943,LOC102308154,LOC106512241,LOC105936842,LOC108425050,LOC103464072 coding downstream 74848 2736304 ~ 2744452 (+)
eps15 eps15 coding downstream 86388 2747844 ~ 2809424 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding downstream 167479 2828935 ~ 2876428 (+)
G49116 NA non-coding upstream 137470 2432799 ~ 2479371 (+)
G49117 NA non-coding upstream 187198 2428120 ~ 2429643 (+)
G49122 NA non-coding upstream 188930 2425130 ~ 2427911 (+)
G49121 NA non-coding upstream 212113 2404515 ~ 2404728 (+)
G49120 NA non-coding upstream 213864 2402683 ~ 2402977 (+)
G49150 NA non-coding downstream 9361 2670817 ~ 2672813 (+)
G49151 NA non-coding downstream 19742 2681198 ~ 2681503 (+)
G49154 NA non-coding downstream 45567 2707023 ~ 2709154 (+)
LOC103026017 NA non-coding downstream 47248 2708704 ~ 2724228 (+)
G49163 NA non-coding downstream 178856 2840312 ~ 2840783 (+)
G48714 NA other upstream 1805576 808155 ~ 811265 (+)
faf1 faf1,LOC107743872 other downstream 321390 2982846 ~ 3152050 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other downstream 1538483 4199939 ~ 4239873 (+)
G49475 NA other downstream 1583072 4244528 ~ 4246227 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 2957703 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 3115596 5777052 ~ 5789265 (+)

Expression


Co-expression Network