LOC103037089 (LOC108442388,LOC105023850)


Basic Information

Item Value
gene id LOC103037089
gene name LOC108442388,LOC105023850
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 6392824 ~ 6400833 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671060.1
acattttggaTTGTCCCCTCATGTGAAGGTCCGGACAGCCCGACGTCTCCAGTGAAGGATCTGAGCACTCACACCCGAGCCATGAGGCTAAAACACCAAGCGCTGGAGGACAGACTGGAGCTGTGTCTCCTGGAGCTGAAGAAGCTCTGCATCAGAGAGGCTGAGCTGACCGGAAAGCTGTCCTCTGACTTCCCTCTGCTGCCCGACGAGAAGCCTCCTCAGATCAGGCGACGCATTGGAGCATCCTTCAAACTGGACGAGGAGCTGATTGCTCAAGATGGAGAGGAGTCGGAGCTGCACGCGCTGGAGGCTGATCTAGCTCTGCATCGGCAGATATATGAGGCGGCCCGTAGGCTGTCCCTGGAGGAACACATCAGCAAGCCGGTGAGGAAGAGCCGGCTGCAGCAGTGCAAGCGCGAGGAGAAGAAAGTGAAGGAACTGCAGGAAGCTTTGCTGAAGCACCGCATCAACCACGGCTGCGTCTCGCCACAGACCTGCCGATCTTCCAGACAGAGCGATCTTGGCATATCCGATGACAGCTCGCTGTCTGACGCTGCCGCACTTGATGATGATTTAGAGTCAGCTCTGCTCTCTCCGACGACTCTGGAGCGTGAGGGCAGTTTCCTGCGCCCAGTCACCCTCACCCTTTCTCCCAGTCACAAATCGAAGCAGGCCGGGTCCAGCTCCAGCCTGGAGTACGAGCGATCGCCCATCCAGAACACTCCATGGAGGGAATCCAGTCTAGATCAGCCCTACcagaagaataagaagctcccgtctgccagcagcagcaggtcaaGCAGCAGTCCAACCCCGTCTGAACAGAGACTGGATGacattcctcctcctccccagTTTGTGTTTAAAAGCCTGGCAGTGCGCAACAATAACTCCACCAGCGCCCCCTCCACCCCGGAGCTGCCACTACGCCGCCACGTCTCTCAGTCCTTCAGACTTCCCAGACCCAAACCTGACCTGAGCAAGCCCACCAATGACCTGAACCGGGTTCGAACTAAGCTCCCTCGTCGGCGCGTCACTGATTTTGCCCTGGCCTATTCGGTCCAGCGTCTGTATCAGTGCAGCTCAGAGGACAGCAGCTCAGAGCACTCCATATCCTCCTACAGCAGCTCATCCAGCCGAGACTCCGCCCCCGAGACGGGCAAAGCCTGCCCGCCTCCGTATGGCTACCACCGCACCCCCCAGAACAAAGCCCAGGGTCAGCGGGCCGCCCCCAACCTGCCCAAAAACAACCTGCTCCGGCCCGCAAACAACCAATCACAGGGGAACAACCAATTACAGGGGAACAACCAATCACAGGGGAACAACCAGGAACGAATGCCGCTGGAGGCCGAAATAAGCAGGATCAACCTTAACAAAACCTTACCTGCTGATTCTGGCAACCAAAACAAGCCACAGCCAGCAGAGGCCACTTCACCTAAGCGGGTACTGAAGCCCCCTCCACCTCCGTACTCCAGGTTGGCCCGAGCCCCTTCACTGAAGGAGTACCCCAACCACCCCACCAGGCTGCTTCCTCGAGATGTGGTGGCAAACGACCTCAAGACCTGGCATCAGAAGAACATCGCTGGAGAGATGAAGCCTCAACCACTACAACGACATGGGTCGATGCGCGTAAAGCGTTCACCCAATCAGGAGCCACCGCCATACCACCAGCTCCAAACACTGAGACAGgttTCCCAGAAAGTGATCCTCCAGAGGGCTGCTGATGGGACTCCTCTGCAGTGGTATGAAGAAGAGGGTTGTGAGATTGTGAGTCAGGTTTAATCACAGCCTGCTGGAAAACGCAAAAAATAAGCAGCACAGACTCTCTTTTAGAGATTTGAGACATTGTTATGTACACTTTAAGaagttttttatacatattgttttatagtttgtttgattgtttgtctATTTATTGAGCCAATGGACTCTGAAACTGCCTGCTGGCAAAAACGATTGATTTTGACCAagattttaaacacaaaaaatgaaGCTGAGCCAGATTGATGTGGCACATCTTTTATTTTTGACCACCTGCAGACTCTTTAAGATCATTCAAGATTGAAATTTGAGTCTGGGACCTACTTGTAAGGCACTATGCCttctttattattgttgttgttgttgttattattattgctgtagTTGTAACTTTTATCCGTGAATATTTTATAGATTGCTATTTCAAAATATGCCCCAAGAAAACGacatttgtaatatttgtgtcTGGTACACAGTTTTGCATAATGAAGGAATTATTAGTGTTTTAGAGCCCtgattatttaatgtaatacattatttttaagtttatgtaatatttatgtttttcttttataaataataattattattttaaattaatctttaatattttctaacactttcagatgttttaatagacgctgctgggctgtttggaattaaatctgtttttctagACTTCCTGTTGGTCTTTATACAAATGCAGATAGATTGTTCTTTTTCAGCAGCAAATaatcattttcttatatttgttTACTAACCacttaatatgtattttatgt

Function

NR:

description
PREDICTED: uncharacterized protein C1orf106 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671060.1 True 2543 mRNA 0.49 8 6392824 6400833

Neighbor

gene id symbol gene type direction distance location
LOC103046076 LOC103046076,LOC108442386 coding upstream 21809 6358495 ~ 6371015 (+)
LOC103046376 LOC103046376 coding upstream 38516 6350142 ~ 6354308 (+)
lhfpl5 lhfpl5,lhfpl5b,LOC107591869,LOC107745833 coding upstream 142221 6246229 ~ 6250603 (+)
dclre1b NA coding upstream 465654 5919174 ~ 5927170 (+)
LOC103022582 adora1b,LOC103022582,LOC108414989,LOC107711940,LOC107680252,LOC107591868,LOC107550463,LOC105912002 coding upstream 480484 5891651 ~ 5912340 (+)
LOC103043236 NA coding downstream 60710 6461543 ~ 6472088 (+)
LOC103041483 slc38a5,slc38a5b,LOC107745748,LOC107678718,LOC107549617,LOC107731265,LOC107668060 coding downstream 145736 6546569 ~ 6587345 (+)
was was coding downstream 189458 6590291 ~ 6601742 (+)
LOC103040567 gpr173,LOC108265110,LOC107549979,LOC107678674,LOC107731146,LOC107549585,LOC105898994 coding downstream 347566 6748399 ~ 6771061 (+)
c6h6orf226 NA coding downstream 397821 6798654 ~ 6800365 (+)
G50051 mapk14a,LOC106572737,LOC108442382,LOC108265726,LOC105023895,LOC103368176 non-coding upstream 96475 6287836 ~ 6296349 (+)
G50050 NA non-coding upstream 97576 6292421 ~ 6295248 (+)
G50036 srpk1,LOC107591832,LOC107745731 non-coding upstream 111894 6265929 ~ 6280930 (+)
G50025 NA non-coding upstream 140943 6179792 ~ 6251881 (+)
G50012 NA non-coding upstream 237802 6152577 ~ 6155022 (+)
G50071 rpl10a,LOC103141192 non-coding downstream 17951 6418784 ~ 6423352 (+)
G50092 tbc1d25 non-coding downstream 75742 6476575 ~ 6479992 (+)
G50135 NA non-coding downstream 97161 6497994 ~ 6499008 (+)
G50136 NA non-coding downstream 98236 6499069 ~ 6499432 (+)
G50138 nt5dc2,LOC108442396,LOC107745746,LOC107668043,LOC100380632,LOC107678756 non-coding downstream 99316 6500149 ~ 6504331 (+)
G50063 NA other upstream 16119 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 603559 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 765372 5619159 ~ 5627452 (+)
G49475 NA other upstream 2146597 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 2152951 4199939 ~ 4239873 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 462523 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 583357 6984190 ~ 6984261 (+)
c6h9orf3 NA other downstream 1329851 7730684 ~ 7884058 (+)
G50568 NA other downstream 1806509 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 1869415 8270248 ~ 8278756 (+)

Expression


Co-expression Network