LOC103033322 (LOC108437580,LOC107731173,LOC108266008)


Basic Information

Item Value
gene id LOC103033322
gene name LOC108437580,LOC107731173,LOC108266008
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 7350669 ~ 7485744 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022671069.1
acagagagcggtAGGGCAGGTTACTGGGCTCATTGCGGCTCAGGCTGAGGAGCTCTCTCGCCGCTAGCTCCAACGTCTTTTGGAGCCAAGATGGCCGCCGCCCGGTGCCCAGTTTCCCCTGCATGTTCCCCTAGCGCTCCCCAAGCGGACCAACGTCAGCGCTCCAGCGGAGAGGAGACAACACTTTATCTTCTCTGAGTCACCCGCGAGCTCCACTCGCCGCACACAGGGGGGCTCGGGCTCACAGGCTAAGGAACAGGGGGGTAAGGAGAGAGGTAGGAGCGCTCCATCCAGCACCTGGCGCATGTGGACAGCGGCCACTGCAGTGAAGCTAAATGGCGGAGAGGGGCGGCAGAGGAGAGGGAACGGACCAAAATAACCACCCAGCGTTCCGCACAGGGGGGCAAGACGAGCACAGGTTTGCCGCCTAGCCACAGGATCTGTTACAGAGCGACAATGGGGGACAAGGTCTCTGTCAGATTTAGCTTGTAGGTTAGCTtagctgctgttttttatttggaagaagATTTGGAATTGGACTCGTTGCTAGGTAACCGTAACTTGGCTGGCTAACGGGCGCGGATGGAGATGGGTACGTTACACTGAGGGTGATTTGAATTTTGTAACTACTTAGCCAGGTTAGCTAGCGTCACGTTACGTTTCTGACAGAATTAGTGTGTGACAGGGTTTTGCTTAGgtgttttgtccattttttgtcgtttttatgtttataaaacactctcatttcttttttttttaacacgggGCGACCCAAACCCCAGTGGTTCTAATTAACGGGCGCGGATGGAGacagatattatatatatgttagcTGTTACATTGAGTGTGTGGTTTGAATTTGGTAGTTTAACGGTTGCGGATGGAGATAAATATAAAGCTAAAGCTAGGTAGATTAGCCTTAGCTACCTTCTGCCCAGTTTAACGATACTTGGCGAGCTGTAAAGCATACATTGTGCGTGTCAGCAGTGTTGCTGAggtgtttggtttattttttaatcgtTTTTATGTTCGTAAAACAGTGTCAGTCCAGTTTGAACAGTAAAAATAGAGTGTGAACGGATTAAACACGGGGCGACACGAACCCCAACCGATAGTGGTTCTCATTAACGGGCTCGGCTGGATACAGATAGCTAGGTAACGCTAGAAATTAGCTGTACATTACATCTCGCGACAGAGTTTTTGTGTCAGCAGCAGTGTTGctgaggtgtttttttattcGTATCGTTTTTGCGTTCTCACCACAGCCTCACTTCAGTTTGAGCAGTGAATATAGAGCTGTGAACGAATTAAACACCGGGCGACCCGAACCCCAACCGACAGTGGTTCTCATTAGCGGCTGGGAATGGATGGATTTCTCCCTGTTGCTCTGCACTGTTGAAGAAGGCTGTGCGTGACGAGAAACTGCGGCTCCAGATCTCAAAGACTGGATCGATACTCATTTCCCagagtctttttatttatttattttattatattttaaccgAGAAATATTTTCAGTTCAGGTTGAAACGTTATAGCTAGCTGTCCCCTAGGTTAACCCTTTGAGGTGCGCTCGAGCTTCGTTGGCAGTGCGAGGAGAATCTATAGCTACCAATGAGAGGCAGGTAGGTTGGCTAAGAAAAAGGCTCACAATTAGCATTTCGTGTACTGAAGCGCCGGTAACGTTGCGTCCTGAGGGCAGAACCGTTTGGCATGAGCAgaattagctaacgttaccagcgAGAAGAGAGACTGCGTCGCTCGTCGCAGAGCCCGACTATGCAGCACGCTGaagcagagagagcaagaaggcaagagagagagaaatttatGGCGACAGGTAACGTTAAACTGTAGggaagatacagagaaagactgTGCTTAGCAAGAAGAGACAATGAGTGCCCGTGTATGTGGTCAATTTGGCGCAATGCACTGGGCGTGGGAATCAAGATGATTTCTGTCAGTAACGGTCCACGTTTTGCTTTCAAGACGTGAATGAAAAAGCTTAGTGTTCATGGCCTGAATGGGTGATTGAGAAGAGGAATATGAGGGAGAGAAGAGACCAGAGAGTTCAGCAAAAGCTGGGGTTCTCCCCATGACTTCCTCCCCGCAGCCAATTTAGTACTGCGGTGGAATTAAAGCTTcaactttttttcttctccttcttctttatCCCCCTCTTTCACCTCATCGGCCGCCTCTCTGGGGAATGGCTCAGCAAGAAAATGTCTCCCAACCACTTCTCCCCGGAATGAGTCATGAATGCACTATAGCGGAGAAGCATCTTCAGTGCTGCGACATTTGACGTTCAGCTCCATGCTGGAGAAGggggaaaagaagaaaaatcagAATGCGCTGGAGAAGCACGCCAAGATGATTCCACGCCTATGTATTTCATCCTACCCCATCACCATCTGCTTTTCATGATTGTTTGCTTGCATAGCTATTTGCAGTATTTCCCCCCATACTTTTGACACATTGGGAACTATGAGTTTGAGGGACCTATGACTGCACTGTGGTTTTTGTGTCACAGGTGGAAAAAATGTGGGAAaatagatgatttttttttcttttcttgccactgtaaAATTGTTTAATTCCTGAgggacaatgtgctttattttgacAAGGTCCTTCTCAGAACAGCCACATGGTGAAATTGACATGAGACTGAGAATTTGCTGACTCAAGCTCTTCTTTCCATCTGGGAATTGTCAGTGGAAATTTGTGTCATGGATTATCAAAAGAACTCAGTCTGACTCAAACAGTTGTGCTAGTCTTTTAGTAATTCCACTGGGAGAGTATAAAACAGTGCCAATAGTGCTGGTTCACCTCCAACAGCTCTCACTAAGACTTCTCTCTCCCCCCCACCTACATCACGTGGGGGGGAGAGCTCCCACATTTGGGGTGACCCTGTGACTTCCCCAATTGCCTGATCTCCCCTTCTGCCAGTCCAGGAAGGTTCCTTGAACCATGGACGGGGGCCAGGGCAGCAGCCCGGAAAGCCCAAACCGGGCGGTGGAGTACCTGCTGGAGCTCAACAACATCATTGAGAGCCAGCAGAAGCTGCTGGAGACACAGCGGCGGCGCATCGAAGAGCTGGAGGTGCAGCTGGACCGCCTCAGCCAGGAGAACAAGGACCTGCGAGTAGATCGTCAGCCCTGTCCACCTCCACCGCCTCCTCCACTGTCCAATTCAGCCTCCAGCCAAACTCACAGCCATCACCATATCCCCAGCCAAACCCACAGCCAGCATCCCCAGCCGGTACCCACATCAGCCACTGTCTACCCCATCCAGAGCCACAACAGTGGTCCTGTCCACAACCCTATCCCTGTACCAGCCCCTCCGCCCCCTCCTCCGCCCATCCCTCCCAGAGACCGTCGTCCTAATGCCAATGTCAACACAAACGTCAATGCGCACACCCGCCTCAGCCGCGGCCTGTCCACTGGCTCCAACCCCACAGAGAGAGAccgggagaaggagagagatagagagcgagaaagagatgGTTCCAGCACCAGCACGGCCACCACTCTGCAGAGACAtGTGGAGGGCGACCCTCAGTGTGGGGACACAGGCAGCTTTTCAGACAGCTCCTGCAGCCAGGGCCCGTACCTGGGCGGATCGGAGCGCTACGGGAAGCCCGGCGGAGCTCCTGTGGGCCCTCAGGGGCCTCCTGTGGCACCCCCAAGCCCAGCCAGCCTGGCCTGGGCCCAGCGAACTCGCCTTCAACCCGCCAGTCTGGCTCTACGcaagcaggaggaggaggagaacaagcGCTGCAAAGCGCTCTCGGACAGCTATGAGCTCTCCACAGACCTGCAGGACAAGAAGGTGGAGATGTTGGAGAGGAAATATGGCGGTTCCCTCCTGAGCAGACGTGCGGCGCGCACCATCCAGACGGCTTTCCGGCAGTACCGCATGAATAAGAACTTCCAGCGGCTGCGCAGTTCTGCCTCGGAAAGCCGCATGACCCGCCGCATCATCCTCTCTAATATGCGCATGCAGTACTCGTTTGACGAGCGTCAGCCGCAGGTGCAGCCTCAGACTCCccaacaacagcaacagcagcagcagcagcagcgctacCACTCCTCAGCCCTGGGCATGGCCAGCCACCCTGCCAACACAGAGCAGGACACAGGGTCACCCTCACACTGCCCCTCCGACCGCGAGGAGTACAGCCACGCAGATGATGCCTTTACCAAACAAGTCACATCCCTCGCAGACTCGATGGACGATACTCTGACCTGCCGGTCGGGCCGAGGCGACTCTCAGGAGGGCAGTGGTGATGGCGCTGGTGAGTCAGAAGActttggtgagtgtgtgtggaccAGCAAGCCCCCGTCCCGGCGTGGAGTGGGTGTAGGGGAGTCGGAGAGGAGCGGTCCCACCATGCTGGGGGGCATGCACGAGGACAGCACGGCCACGTCCTACAGCGACGTCACGTTGTACATGGATGACGGCGTGCCCTCGTCGCCCCTGTCCATCGAGCGTGCGCCCAGCAGCACCGATACAGAGTACTGGGGAGTGGGAGGCGGTGCCGGGGGTCGCGAGGACAGCCGGGATACGGAGGGTGGAGGCAGCAACAACAGCCGGCGCAGCACGCCCTGTACCGAGTGCCGAGACTACCGGCTCCGCGGGCCTCACCTGCCCGTGCTCACCATCGAGCCGCCCAGCGACAGCTCAGTGGACATGAGCGACCGCTCGGACCGAGGCTCTCTCAGCAGGCAGATGATGTACGAGCAGGAGCCTGGGGGAGGAggcggaggaggaggcggaggaggaggagttggAGGAGTTGGAACAGGTGGAGTTGGAAGTTCAGGTTCTCCACAAGGAACACTCAAACACAACCCAGCGGTCCGCTCGGCCAGCGCCTGCACTGCCCAGGGTCAAACCCGCCCCATGGGAAGACCCGTGCCCTCGCCCCTGCCAACGCACCTACCGCACCACGCCATCCTGCtccaccaccagcaccagcatccacacccacacccacatcCACACCCACatccacacccacacccacaccatCCTCTCCAGCACCACCCgctccaccatcaccaccaccaccccctgcCCCCTCACCTGCACCATCACCCAGGACCCCACTACCCAGACCCTGGCTCGCCCTCACCCACCCAGCCGCCACCTCTCACGCCCCTGTCCTCCGCCTCCTCCGCACCCCTGCCCTCCACAGGCATGGAGCAGTCGGACGGAGACAACGACTCCCTCAACTCCACCACCAACTCCAACGAGACCATCAACTGCAGCTCGGGCTCCTCGTCCCGGGACAGTCTGCGGGAGCCGCTGCCGGCGCTGGGTAAACAGACCTACCAGCGGGAGAGCCGCCACAGCTGGGACTCGCCTGCCTTCAACAACGACGTGGTGCAGAGGAGGCAGTACCGCATCGGCCTCAACCTCTTCAACAAGAAGCCAGAGAAGGGCATCCAGTACCTGATAGAGAGGGGCTTTGTGTCGGACACTCCGGTGGGCATAGCCCGCTTCATCCTGGAGAGGAAAGGACTGAGTCGGCAGATGATCGGCGAGTTTCTGGGGAACCGGCAGAAGCAGTTCAATAAGGACGTGCTGGACTGTGTGCTGGATGAGATGGATTTCTCCGGGATGGATCTAGACGACGCTCTGCGGAAGTTCCAGGCTCAGATTAAGGTGCAGGGAGAGGCTCAGAAAGTGGAGAGACTGGTGGAGGCCTTCAGTCAgaggtactgtgtgtgtaaccCTGCACTGGTACGACAGTTCCAGAACCCCGACACTATCTTCATCCTAGCCTTCGCCATCATCCTCCTCAACACTGATATGTACAGCCCTAACGTCAAACCGGAGAGGAAGATGAAGCTGGATGACTTCATCAAGAATCTCAGAGgtGTGGACAACGGTCAGGACATACCAAGGGACCTGCTGGTGGGAATCTACCAGCGCATTCAGAAGTGGGAGCTGAGGACCAATGATGATCATGTTTCACAAGTTCAGGCTGTAGAGAGAGTGATAGTTGGCAAAAAACCTgtCATCTCCCTGCCCCACCGCAGGCTGGTCTGTTGTTGTCAGCTGTATGAGGTTCCTGACCCTAACCGGCCGCAGCGCAGCGGGGTTCATCAGAGAGAGGTGTTCCTCTTTAATGACCTGCTGGTGGTCACTAAGATCTTCCAGAAGAAGAAGACCTCGGTGACGTACAGTTTCAGACAGTCCTTTCCTCTGGTGGAGATGCAGGTTCACATGTTCCAAAACTCCTtttatcCTCATGGTGTCCGGTTAACCTCGGCGATCCCCGGAGGCGAGCGTAAGGTCCTGATTGTTTTCACAGCTCCGAGTCAGCAGGACCGCACGCGCTTCGTCAGTGACCTGAGAGAGAGCATCGCTGAGGTGCAGGACATGGAGAAATATCGAGTGGAGTCGGAGCTGGAGAAGCAGAAGGGTGTGATGCGTCCTGGTCTGCTGAGTGGAGATGGTAGTGGTGGTGTTGATGGTATGAAGAGCGAGGCAGTGAACGGCACTCTGAGCAGAACAAGCCTGGATGATACGTACGCCACAGGGGAGGGGCTTAAACGCACAGCACTCAGCTCGTCTCTCAGAGACCTCTCAGAGACAGGGAAGCGTGGCCGCAGAAACAGCGTCGGCTCTTTGGATAGTACAATTGAAGGCTCCATCATTAACAGCCCGCGGCCTCACCAGCGTCTGCCCATGGGGGGCGCTCTTCCTAGCTGCTACGGGCTTGAGGACTACCGGCCTCACCGCCCCATCCTGAGCCCCGGTGTAGGGGTGGGGGGTGGGCCGGGGCAGTTCCACAACGCGTCGGGGAACGCAGGAGTGGTGGTTGGGGCAGGCCCGCTCCCCGGCGGCGGCGGTGGGGGGACGGGGAGCGGCTCTGGAGGGAGCAGCTCCGGTTCATTCCTGGGCTCCCTGTTTGGCAGCAAGCGAGCCAAGCAGCCTCCCGCACCACTCATCCCCCCAGGGCCACACTACCCTGCCCCCGTGCCCCCACCTACTACAGGGGGTCCGCCACCACCTTCCCCATCCGCCCTCAGCCAGTCGGATGGAGGGCCGTCCAAGATCCAGGCGCTGCACGCCCAGTACTGCCACAACAGCGTCGGGCACAACGTTGGCCAGCCTCCACCTCcgtaccaccaccaccatcaccgcTACCAGATGCAGCCTTTGGGCGGTGCACAATTGCCCCCCACGCATCACCATACCATTCAGCGCAGTTCCCTGCCCCGCCGTGGCCCGTCCGCTCCCTCCCACGCCCAGCTGTCCCAACAGCTTTCCCATGGCCGCCACTCCAGCATGGGCTGTACCCCTCCGCCTCTGTCCCCTCACTCGCCCCACTCTCCACTAGCCCCCACCTTCAGCTTCTACCACGTCCACCCCAACCCGGCTCGCGTTCCCGGTCCACCGGGCAAGCTgcctctcactctgtctcactctcagcCCCACCCACACGGCCACTCCCACGTTCACTCTCATATCCACAACCATCCTGTTCACGCACACCCACTGCTGCACCACCAGGTCCACCATCAGCAACCGCACCACTTCATCTTCGCCCCGCCCCCTCAGGCGCCTTCGGCCATCACGGCTCGCCACGTCCAGCAAGGCGCCCCCCAGTACGGCCCCTTTCACTACCCGCCCCTGTCCTCCATCCCGCCGCCGCACTCGCCTTTACCCCCGCCTACCTCCCCCCTCACCCCTCTTACACCGCTCACGCCGCTCTCGCCGCTGCTGCCTCCACCCCCTCACCCAGCCCCCGGACCCCCACAGGTGGGTCTCCAGGGGCCCGGCCAAGTAGGGGGAGGGGTCACGGGGGGCGGGGCCAACACCAACACGGTCGGCAGCTCCAAATCCAAACCCGTCAACCGCATCAGCACGGTGGTGTGAGGGGCGGAAGGGCTCGGAGGGGCCGAAGAGGCCCCAGAGGGCCACGCAAGCGGAAGCACACCACGCTTCGACTCTGCTACTTCCACATTCGCTTTCCGCACACGTAGAGCTGGCGGCTGGATGCTACACGCGTACACCGCTGTCGAATCACACCAGTACTCTCAACTTCTGAATATCCATCATATTCATCAGCCTGAACTGAAGAGGttagagctggagctggagataAATTCCATCTTTTCCAGTGGTTGGCAGAAGCTGGGCAGCTACCATGAACTAGCTAGAAACTCGATAATGTGTTGCCAAAGTGGGTAAATGGTAAGAAGTTGGTGCCAAACTACACTGACTTACAAATGTACAAATCAGAATCAGCTCTTCTAGAACAGATTGAGATGAGGAACTACTCTACGTGTGCCGTCGAGCTGCATCCCTGCTCTTTAGCTGGGCTGAGGACAGGAAAGCAGAACTAACAGGAGGACCAGAAGTTTTGGAAAAAGCTTGAACACAACTTTAACagaactgagattaaaaaaaaaaattctccatttttgagatgtttattttttttttcctcaattgACAATCATTCCAGGTccaggtgattttttttaaacaaaatttcaaCAGATTCCTGCATAAGAGTGGCTCTCTACGATGGACTACAGCTTTAAACAAGCCAGTAATGCACTTTGAACTGTACGCACCCTTCTTCTCATATTTGTAATAGGACTTTTTTAGTGGAAAGAAACTATAGGACTATAGGAGAGAGCCATTCTGGAGGCATCATTCCAATACGTGGGTCTAACGTTGCAGtaaaaatgaaaggaaatgTTTTTGAGAATAGAAAAGCGTACAAACACAGGATAccgttttttttgtcagattaaAATCTTCAGATCTGCAATAAATCAGCCATAGTCTGCAAAATTCAACATTCAATTTCTTAGGGACctctttcttgtttgtttttactggAGATGTATTGAACTCAGAAAATAGAGAAACTATTTTGTTTTTGACCTTTAGGAAAATATAATGAACAGAACATgaatatacgtatatatatatttttttctcattctaaATGAAAGAATTAGCGAATCACATTTTAATTGTCAATTACATTGATTTTTTAATACTGACATTTTTTCTACAACAACGTTTTGACCTGAAAACTCTGCAAACAATATCTAATGACATATTTACACACTTTGTcttattaaactaaattaataaatagccTTAGAGCCCATTGTTAGAGTTTAGGATTAGTTAAAGGTGCattggcacatgctaacataacgtaacttaatgtaatgtaaaggaaCATACAGCGCCTCCACCTGTTTAATCAGAATtacacaaaagaacaaaaagggACGTACCTTAAAGGGTAAAAGATGAGAATTTAACTCTATAAGAGACTATTGTGTGGGCattgctgatttttttcttgtaaaGTTTGAGAGTGCATTGGATCAATTGTATAATGACCTACATGAACAGATACTGACATTCAAACTCGAACGCTGATTGTACAGTACGAGTCATGCTAtggtttaaatatatatcttttattttcgttattaatattattatgatgTCAAATACTACTACTGATATTATCCTTGATATTTTTGGTGTAACAGTTACTACTAATGCAAGTGGATATCGTTTCTGTGCCGGTTTGTTTTCTAaaagcttttttcttttcttttttttttttttttttaaactaacatGCCGTGATTTCATGTGTACAAACAAACTTTTTGAGACAAACTTTGAGAACTGGGCTACCTACTTCAGGAACTTGTTTTGCAGtaagcttgaaaaaaaaaaaatgaaaacaagaaaa

Function

NR:

description
PREDICTED: IQ motif and SEC7 domain-containing protein 2-like isoform X1

GO: NA

KEGG:

id description
K12495 IQSEC; IQ motif and SEC7 domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022671069.1 True 9757 mRNA 0.53 16 7350669 7485744

Neighbor

gene id symbol gene type direction distance location
LOC103033640 LOC108437579,LOC108265805,LOC107731248 coding upstream 13836 7242125 ~ 7336833 (+)
LOC103034603 NA coding upstream 220088 7123848 ~ 7130581 (+)
LOC103037743 LOC108437573,LOC107549481,LOC107668067,LOC107731205,LOC107745762 coding upstream 311033 7026649 ~ 7039636 (+)
LOC103035560 NA coding upstream 390037 6941690 ~ 6960632 (+)
c6h6orf226 NA coding upstream 550304 6798654 ~ 6800365 (+)
porcn porcnl,LOC108437582,LOC108265978,LOC107549961 coding downstream 70613 7556357 ~ 7571558 (+)
csde1 csde1 coding downstream 87838 7573582 ~ 7596577 (+)
apex2 NA coding downstream 117275 7603019 ~ 7607872 (+)
lrif1 NA coding downstream 123136 7608880 ~ 7615983 (+)
dock8 dock8 coding downstream 132455 7618199 ~ 7718993 (+)
G50227 NA non-coding upstream 268323 7003089 ~ 7082346 (+)
G50258 NA non-coding upstream 270528 7077233 ~ 7080141 (+)
G50253 NA non-coding upstream 278183 7066875 ~ 7072486 (+)
G50224 LOC108412504 non-coding upstream 354475 6985536 ~ 6996194 (+)
G50197 LOC108442380,LOC105898899,LOC107667993,LOC107549944,LOC108265139,LOC105418848 non-coding upstream 558972 6788872 ~ 6791697 (+)
G50439 NA non-coding downstream 453857 7939601 ~ 7942748 (+)
G50535 NA non-coding downstream 559957 8045701 ~ 8046053 (+)
G50550 NA non-coding downstream 616331 8102075 ~ 8102287 (+)
G50565 NA non-coding downstream 716693 8202437 ~ 8203419 (+)
G50580 NA non-coding downstream 816772 8302516 ~ 8302910 (+)
trnae-cuc NA other upstream 366408 6984190 ~ 6984261 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other upstream 408691 6863356 ~ 6941978 (+)
G50063 NA other upstream 973964 6371520 ~ 6376705 (+)
LOC103023397 NA other upstream 1561404 5777052 ~ 5789265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other upstream 1723217 5619159 ~ 5627452 (+)
c6h9orf3 NA other downstream 244940 7730684 ~ 7884058 (+)
G50568 NA other downstream 721598 8207342 ~ 8221162 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other downstream 784504 8270248 ~ 8278756 (+)
G50583 LOC108437602,LOC103398889 other downstream 857196 8342940 ~ 8344514 (+)
G50889 grid2,LOC107556295 other downstream 2157630 9643374 ~ 9782721 (+)

Expression


Co-expression Network