LOC111192642


Basic Information

Item Value
gene id LOC111192642
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25358002 ~ 25378241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650053.1
AGTTCTGTAGTTTCAGGTTTGTTACAGACAGTCCCTCATATCGTGTTGTGGACCTGCGTGAAGTGGTAATAAAACAGGGAATGAACAGCAGATTTATGGAAACTTTGTTGGAGATTGTCAAATGCTGGCGTGTTAAGTGTTTTTATCAGCAGGGTGAAGAAAGCTTTGATTCACTTCAAGGGCTGGTGTTATCACTGCAGATTGAAAtgctctctctgtccctctctctaaAGGAGTTCTGTGACAGGGATACATAATCAGCCACTGGCAGAGCTTTCATTAAAACCTTCAGGAATAATGTCGACTTCTTCATCGGATCTGTCCGGTTCGTCGGTTGACGCAAAGGTGAGCACCAACGATACTACTGCAGACGAGCAGGAGGAACGATTAACCCCTGGCGAtcagcacacagacagacagaggtaAATGGAAATGCCTGAATGGAAATCATCATACTTTATGTGGCAATAACGAGGCCCTGATTCCGGGATCAAGTTAGCCACTGCTCAAGGTCCATTGTTTCAAGGCTGAGTGGTCTTTGCAGCAATAAGAGCAAGAGTAACCCCCCCCTCAACCACCACACAACCCTTCCATGTCTCACCGTCGCTGGTCTCCCCCAGCTCCAGCCTTCAGAGCTAATTAGTTTCAGAGGGAATGGGAAAGGGGGCTCCAACCAAGCCCTTCCCCAGCACAGCAACCAAGTGTAGAGGAGATGCATTAGTGAGACAAATACGGGGGAAGGCTCAGCCCCGCTGTAAAACTGCGGGAACTACTGTCGCAGAGATGCATTTTGGGGGGTTACGCACAACATCAAAAAGCATCAGATCCCACCGTCTGGAAAATGGGATTGGACACGGCAGTCCGTTTTAATCTCCAGCAGGTGAAACTTTTCCATGTGTGGTATCCCTGAGCCACATCCTCTTCCATGTGCAAAGATGTCTCTTTTCTGATTTAATAGATGGACCCAGTTTTCCACCTTTACTGTAAGTTGAGGAGATCTAGTTTACGTCTGAATGCAGTGATAACCCatgttttttggtaaaatgTGTTGTTgcactattaaaaaaacaaacaaaaaaataaatgatgaaatGCGTTCTTTGGAGCAGTGCCAAAGAAGACCTATTTTTGGATCTCTAAAGAACCCTGTGGCAATGCATATTGTTTTAGCTTTATCGTAA
>XR_002650054.1
TAACTAACTGGCTAATATTTTGCAGTTTTAGCTAGCCaatgctaacgctagctaactaggttaTCTAACTAAgctaatgttttagctaatgttagttagctagctgactagttagctaactatctagCTAGTGCTCGCTATCAGTCTAACCTAGTTAGTTAATGCTAGGTAGGTTATGTTAGTTATCTAACAAATACAATTAGTTTGTGAATAATACAAAAGGGTCTTCAAAAATATGAGTTGGAGATTGTCAAATGCTGGCGTGTTAAGTGTTTTTATCAGCAGGGTGAAGAAAGCTTTGATTCACTTCAAGGGCTGGTGTTATCACTGCAGATTGAAAtgctctctctgtccctctctctaaAGGAGTTCTGTGACAGGGATACATAATCAGCCACTGGCAGAGCTTTCATTAAAACCTTCAGGAATAATGTCGACTTCTTCATCGGATCTGTCCGGTTCGTCGGTTGACGCAAAGGTGAGCACCAACGATACTACTGCAGACGAGCAGGAGGAACGATTAACCCCTGGCGAtcagcacacagacagacagaggtaAATGGAAATGCCTGAATGGAAATCATCATACTTTATGTGGCAATAACGAGGCCCTGATTCCGGGATCAAGTTAGCCACTGCTCAAGGTCCATTGTTTCAAGGCTGAGTGGTCTTTGCAGCAATAAGAGCAAGAGTAACCCCCCCCTCAACCACCACACAACCCTTCCATGTCTCACCGTCGCTGGTCTCCCCCAGCTCCAGCCTTCAGAGCTAATTAGTTTCAGAGGGAATGGGAAAGGGGGCTCCAACCAAGCCCTTCCCCAGCACAGCAACCAAGTGTAGAGGAGATGCATTAGTGAGACAAATACGGGGGAAGGCTCAGCCCCGCTGTAAAACTGCGGGAACTACTGTCGCAGAGATGCATTTTGGGGGGTTACGCACAACATCAAAAAGCATCAGATCCCACCGTCTGGAAAATGGGATTGGACACGGCAGTCCGTTTTAATCTCCAGCAGGTGAAACTTTTCCATGTGTGGTATCCCTGAGCCACATCCTCTTCCATGTGCAAAGATGTCTCTTTTCTGATTTAATAGATGGACCCAGTTTTCCACCTTTACTGTAAGTTGAGGAGATCTAGTTTACGTCTGAATGCAGTGATAACCCatgttttttggtaaaatgTGTTGTTgcactattaaaaaaacaaacaaaaaaataaatgatgaaatGCGTTCTTTGGAGCAGTGCCAAAGAAGACCTATTTTTGGATCTCTAAAGAACCCTGTGGCAATGCATATTGTTTTAGCTTTATCGTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650053.1 False 1181 lncRNA 0.45 5 25358002 25378241
XR_002650054.1 True 1314 lncRNA 0.44 5 25358454 25378241

Neighbor

gene id symbol gene type direction distance location
snx2 snx2 coding upstream 11903 25323117 ~ 25346099 (+)
sncaip sncaip,LOC103399731 coding upstream 53887 25297056 ~ 25304115 (+)
znf438 NA coding upstream 642769 24641088 ~ 24715233 (+)
arhgap12 arhgap12 coding upstream 894837 24364844 ~ 24463165 (+)
kif5b kif5b,LOC108430866,LOC107753262 coding upstream 1001338 24331622 ~ 24356664 (+)
prdm6 prdm6 coding downstream 20742 25398983 ~ 25441210 (+)
nudt12 nudt12 coding downstream 144734 25522975 ~ 25531959 (+)
LOC103035659 LOC103035659,LOC108430319,LOC108265778,LOC106587031,LOC105014051 coding downstream 224160 25602401 ~ 25612117 (+)
LOC103036292 LOC103036292 coding downstream 247005 25625246 ~ 25633257 (+)
LOC103021869 NA coding downstream 259218 25637459 ~ 25640853 (+)
G54310 NA non-coding upstream 131904 25225117 ~ 25226098 (+)
G54306 NA non-coding upstream 221008 25136435 ~ 25136994 (+)
G54303 NA non-coding upstream 259478 25098267 ~ 25098524 (+)
G54281 NA non-coding upstream 404171 24950612 ~ 24953831 (+)
G54280 NA non-coding upstream 414226 24943451 ~ 24943776 (+)
G54376 cep120,zgc:163014,LOC107712640 non-coding downstream 89813 25468054 ~ 25471996 (+)
LOC111192644 NA non-coding downstream 174301 25552542 ~ 25561370 (+)
trnaw-cca_1 NA non-coding downstream 186420 25564661 ~ 25564732 (+)
trnaw-cca_2 NA non-coding downstream 187001 25565242 ~ 25565313 (+)
trnaw-cca_3 NA non-coding downstream 188654 25566895 ~ 25566966 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other upstream 249131 25092562 ~ 25108871 (+)
epc1 epc1,LOC108430856 other upstream 1067237 24254187 ~ 24290765 (+)
G53804 ddit4 other upstream 3436408 21919225 ~ 21921594 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other upstream 3610922 21673574 ~ 21747080 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other upstream 4532328 20794025 ~ 20825674 (+)
srp19 srp19 other downstream 167751 25545992 ~ 25549494 (+)
LOC103040153 cdc14b,LOC108265480 other downstream 1158811 26537052 ~ 26551570 (+)
LOC103023473 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 other downstream 1584651 26962892 ~ 26973026 (+)
G54682 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040,LOC107713034 other downstream 1642003 27020244 ~ 27022891 (+)
G54690 tmem127,LOC107552193,LOC106579884 other downstream 1654594 27032835 ~ 27034938 (+)

Expression


Co-expression Network