LOC111192665


Basic Information

Item Value
gene id LOC111192665
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31477571 ~ 31486156 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650070.1
GGACACCCTGGGCATGTCCTGGTCCCTGAAAGGATTCCGCCCATGTGGACTGGTTGGACATGGGCCAAAATGACGTTTCGTGTTGCACGTAAACTCACCATTGAAATTAGGTAGGACACCCTGGGCGTGTCCTGGTCCCTGTGAGGATTCTTCGATGTACAATGGTTGTACCACCTTGATGTGTCCTGTTGTGTGagaatAAATAGCTCTGGCTGAGGAGGTAACCTGCAGATTAAAAGTGTTTGTCTAAACTAGTCAGCTGAACTACACACTAACAAATGTAAGTTGTTGTGATTTAGTATACGTACTACACATTAATTGTCAAGAGCTTTTGCTTACGTTTTTATTTAGACATCTGAAGTACTCTTAAGAGGTGAGTTTTTCCAAATATTTTCCCTTAAAAggtgagtttcttttatttcattttttcttaatcATGTCCTCTGTAAATAGGTTAATTCAACATTACAATAAGGgaataatggatttttttttttttaatttacaagaAAACGTACTCTGCTCTCAGTTAAATGTAGGCCTTGTGGTTAACTGACTATTATCCACAATGAAACTGATACACAGATAAGTTAAAAAGTTTTGAAATGTTCCATTAAATCTACCTTTAGGAATGTTTCAGACATTAAACCTTGAATATCTGACAGATTGTTACACCAATCCTGCTTTGCTCTTTTAGGCTGAAAGGTACTGGTAAGTTCTAAGAATTCATAAAAGTCTTAATTCAGAGCTTGACATTGTAGCACATTTTTTATAGCTAAGGGTGTATCGATGCTGTCAAATTATTGAAAGAGGATATACACTGTGGTTGTTTCATCCATAAATATGTGTCTTGTATGTGTGATGGTATCCATTTTGTAAACATTAAATACAGTACCATTGTGTTTTGAACTGTGTTGTTTCTGTCTTTGAGGTGGGGCAGGGGGTCTTGGTGCATTTGGCAGTCTTTTTTTGACAGAATTGAAGTGTTTATGGAGGCCTTTTCCAGACGTCTTTCAAGTAAACAGACCTCTcaacagaagagagagaaccTGGCATACAAGGTGCATGCATATAGTATCATTCAAATTCGATTTTGTGTTGAATATAGAGTAATGCTAATTGATTTATGGATCAGTCTGCTCATGGTTCAATATTTCAGTCTCTATTGGGACACAGCAGAGCTAACCAAAACCGTGGATTTCTGTGTGACATTTCACAGGCTCTCTCAACTGGTGCTTGgcattttgcatgtttttaaatgtgtttgataGACAATGTATGCCACATATAGAGTGCCAAACCtggcaaaaatgtatatattttttaaacaaaaggaaaatgaaGAACGAAAAAACTATTTAGgagtataaaaacacaaaacctaGACATACGTTTTTATTCATCTAACATAGATATTGAATATTAACTAAgttgttttatttaggtttttgcTGATAAACGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650070.1 True 1462 lncRNA 0.36 4 31477571 31486156

Neighbor

gene id symbol gene type direction distance location
slc15a4 slc15a4,LOC107659270 coding upstream 537860 30847907 ~ 30939711 (+)
LOC103026612 LOC108442518 coding upstream 727655 30659726 ~ 30749916 (+)
LOC103026908 NA coding upstream 852189 30614316 ~ 30625382 (+)
LOC103040742 NA coding upstream 1127950 30340579 ~ 30349621 (+)
LOC103040008 NA coding upstream 1204450 30253550 ~ 30273121 (+)
golga1 golga1 coding downstream 209462 31695618 ~ 31728020 (+)
pop5 pop5 coding downstream 341261 31827417 ~ 31830620 (+)
rnf10 rnf10 coding downstream 345198 31831354 ~ 31843104 (+)
mak16 mak16 coding downstream 371270 31857426 ~ 31863709 (+)
LOC103046271 NA coding downstream 380998 31867154 ~ 31869244 (+)
LOC111192664 NA non-coding upstream 243 31475677 ~ 31477328 (+)
G55698 NA non-coding upstream 8570 31468714 ~ 31469001 (+)
G55606 NA non-coding upstream 634226 30777915 ~ 30843345 (+)
G55605 NA non-coding upstream 716619 30759802 ~ 30760952 (+)
G55591 NA non-coding upstream 841373 30635584 ~ 30636198 (+)
LOC111192667 NA non-coding downstream 32934 31519090 ~ 31548693 (+)
LOC111192731 NA non-coding downstream 75179 31561335 ~ 31566754 (+)
G55741 NA non-coding downstream 89208 31575364 ~ 31581042 (+)
G55747 NA non-coding downstream 109673 31595829 ~ 31599571 (+)
G55751 LOC108411246 non-coding downstream 162081 31648237 ~ 31648505 (+)
G55502 NA other upstream 852525 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 927510 30528862 ~ 30550061 (+)
G55218 NA other upstream 2722754 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 2820753 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 3539182 27814215 ~ 27938389 (+)
G55831 LOC107691557,LOC108411168 other downstream 434664 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 488525 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 573253 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 696921 32183077 ~ 32217411 (+)
G56160 NA other downstream 1872058 33358214 ~ 33366012 (+)

Expression


Co-expression Network