LOC111192667


Basic Information

Item Value
gene id LOC111192667
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31519090 ~ 31548693 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650072.1
aacaaactcattggcatctgtcagtctggaaaagaatgAAACATTGTGTTGGATAAAGTTGACAGATGAGGAAACAAACTCATTGGCAtctgtcagtctggaaaagGAGCTGCAAGAGTCCATCAACAAAACCTCTCCATGGACTGCTGCCATCGTTTCTTGAGAAAGCACACCCAAAATGCGTGAAAAGGAGTACCCCTCTCTAGaaATGCCCAGCCGGCCTGCCTGGATGCCTCCATTTGAACTGACCTTTTAAACTACAATTCCGAGTTTGTGAGTAGTGTGCCAAGTcgtgctggaaaatgaaatctgcatctccaacagtctgtcatgtctggtgctgaaagcacgtctgtgtctccca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650072.1 True 364 lncRNA 0.46 5 31519090 31548693

Neighbor

gene id symbol gene type direction distance location
slc15a4 slc15a4,LOC107659270 coding upstream 579379 30847907 ~ 30939711 (+)
LOC103026612 LOC108442518 coding upstream 769174 30659726 ~ 30749916 (+)
LOC103026908 NA coding upstream 893708 30614316 ~ 30625382 (+)
LOC103040742 NA coding upstream 1169469 30340579 ~ 30349621 (+)
LOC103040008 NA coding upstream 1245969 30253550 ~ 30273121 (+)
golga1 golga1 coding downstream 146925 31695618 ~ 31728020 (+)
pop5 pop5 coding downstream 278724 31827417 ~ 31830620 (+)
rnf10 rnf10 coding downstream 282661 31831354 ~ 31843104 (+)
mak16 mak16 coding downstream 308733 31857426 ~ 31863709 (+)
LOC103046271 NA coding downstream 318461 31867154 ~ 31869244 (+)
LOC111192665 NA non-coding upstream 32934 31477571 ~ 31486156 (+)
LOC111192664 NA non-coding upstream 41762 31475677 ~ 31477328 (+)
G55698 NA non-coding upstream 50089 31468714 ~ 31469001 (+)
G55606 NA non-coding upstream 675745 30777915 ~ 30843345 (+)
G55605 NA non-coding upstream 758138 30759802 ~ 30760952 (+)
LOC111192731 NA non-coding downstream 12642 31561335 ~ 31566754 (+)
G55741 NA non-coding downstream 26671 31575364 ~ 31581042 (+)
G55747 NA non-coding downstream 47136 31595829 ~ 31599571 (+)
G55751 LOC108411246 non-coding downstream 99544 31648237 ~ 31648505 (+)
G55771 NA non-coding downstream 173931 31722624 ~ 31724049 (+)
G55502 NA other upstream 894044 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 969029 30528862 ~ 30550061 (+)
G55218 NA other upstream 2764273 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 2862272 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 3580701 27814215 ~ 27938389 (+)
G55831 LOC107691557,LOC108411168 other downstream 372127 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 425988 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 510716 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 634384 32183077 ~ 32217411 (+)
G56160 NA other downstream 1809521 33358214 ~ 33366012 (+)

Expression


Co-expression Network