LOC111192687


Basic Information

Item Value
gene id LOC111192687
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40315414 ~ 40335058 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650086.1
tgaccaacaaaccaaccaaaatGTGCGCAAGATGTGCGCAAAAaagagcttctgtctctcaCTTCAAGTCTACAAGGTGCAGTAGGTCACAGCTACAAAACCTGACAGAAAGCAGCAAGCACTGGTGGACTGATCATCTACTGAGCTACATGTCATCTGCATCTCCTCTCCAGGGGTCATGGCCCCCACGCTAAGCGAAGCCGGGGAGGTGGGGCTTGTAGGAGTTGGCGTCGCA
>XR_002650087.1
AGTAAgcgcagcgccatcttgtcccagcgctgaaagtgacgtcacgaggttggtttcCCGAAAGCCTCACTAACATAAActattttgtacttttgtattgcccctggGAGTAGTAATACTGGGTATAGTATACTTTTATAGGGTGAAGAATGAGCAAAAtgttcactttcactttcatacctcCCCTCTGACAGCTGTTCTTCAGCTGGCTAGCCGCGCTGAAGCGcgagaatcctccggttagctgcaatgctaggggttaggagcgagcactttctagacgAGGACTATGTGGAGGAGAGGGAttttgagtcaggagcattagtGCCGGACAAATAAGCTGAAGTcagaggcttttttcctccgttttaaTTTTTCCTCTGAAAACTGGGATGTACAGACTGCCCGACTGGAGGTACTGTAACAGCAGCAGAACGAcgcgctcacccagcagagcacCGTGAGGTCACAGCTACAAAACCTGACAGAAAGCAGCAAGCACTGGTGGACTGATCATCTACTGAGCTACATGTCATCTGCATCTCCTCTCCAGGGGTCATGGCCCCCACGCTAAGCGAAGCCGGGGAGGTGGGGCTTGTAGGAGTTGGCGTCGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650086.1 False 235 lncRNA 0.52 3 40324665 40335058
XR_002650087.1 True 615 lncRNA 0.51 3 40315414 40335058

Neighbor

gene id symbol gene type direction distance location
LOC103035984 LOC103035984 coding upstream 30113 40258521 ~ 40285301 (+)
LOC103036504 ren,LOC107727110,LOC107570508,LOC106566646,LOC107747224 coding upstream 68128 40237042 ~ 40247286 (+)
LOC103035670 NA coding upstream 165342 40144064 ~ 40150072 (+)
kdm5c kdm5c,LOC108265475,LOC107550909,LOC107747206,LOC107570512,LOC107724909,LOC107702826 coding upstream 190379 40096263 ~ 40125035 (+)
LOC103038904 LOC108412149,LOC103139056,LOC106915889,LOC106954557 coding upstream 354155 39843311 ~ 39961259 (+)
LOC111192734 LOC108414049 coding downstream 147952 40483010 ~ 40486574 (+)
LOC103024512 mapkapk2,LOC108414051,LOC107683909,LOC107550950 coding downstream 177195 40512253 ~ 40530993 (+)
LOC103023889 LOC108414619 coding downstream 208451 40543509 ~ 40553151 (+)
trnaw-cca_40 NA coding downstream 264933 40599991 ~ 40600062 (+)
wrap73 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 coding downstream 385746 40720804 ~ 40748739 (+)
G57790 LOC108265753,LOC107570510,LOC107724755,LOC107702833,LOC104935322 non-coding upstream 2586 40308495 ~ 40312828 (+)
G57773 rbm39b,LOC108442077,LOC108265754 non-coding upstream 14899 40292808 ~ 40300515 (+)
G57763 NA non-coding upstream 89759 40223105 ~ 40225655 (+)
G57755 NA non-coding upstream 136250 40178607 ~ 40179164 (+)
G57749 NA non-coding upstream 151163 40163046 ~ 40164251 (+)
G57824 ywhaba,LOC103023259,LOC108414621,LOC107708121,LOC107584065,LOC107595428,LOC108412308 non-coding downstream 212497 40547555 ~ 40579801 (+)
G57823 LOC108414618,LOC108265404 non-coding downstream 218610 40553668 ~ 40556691 (+)
G57831 LOC103023575,LOC108414617,LOC108433700,LOC103460371,LOC103156966,LOC108265406,LOC100694607,LOC105906813 non-coding downstream 244857 40579915 ~ 40584488 (+)
G57834 NA non-coding downstream 252350 40587408 ~ 40588158 (+)
G57825 LOC103026801,LOC108414620,LOC107756851,LOC107702881,LOC107573971,LOC107691553,LOC107566963,LOC108265407 non-coding downstream 284511 40619569 ~ 40627558 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 225143 39967090 ~ 40090271 (+)
G57664 NA other upstream 268947 40044653 ~ 40046467 (+)
frmd3 frmd3,LOC107678471 other upstream 944829 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 1161938 39109244 ~ 39153476 (+)
G57066 NA other upstream 3309616 37005273 ~ 37005798 (+)
G57856 tp73 other downstream 339982 40675040 ~ 40680555 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 1039631 41374689 ~ 41377445 (+)
G58025 NA other downstream 1102969 41438027 ~ 41438911 (+)
ndufa7 ndufa7 other downstream 1700781 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 1873663 42208721 ~ 42281970 (+)

Expression


Co-expression Network