LOC111192692


Basic Information

Item Value
gene id LOC111192692
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46325449 ~ 46330506 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650092.1
GATGTGGGCGGATACGCACGGCTGTATCTCTGGCTCTGATTGGTCTATTTTGACACAGAATGGCTCATTTGAAAGCGGAAAGTGTCTACAATTGGACGAAACGGCTGTCAGTCAAAGTCAATGGAGCATTTTGAATTTCGTGCTGTGTTTTTTCGACGCTGAATAAATTATGAGCGCTTTTCTTCGTAAAAGTCCTCACGCTCTGAGTCTGATAAGAGGACATCTGTGGCTAAATGGAAAGCTGtatactacttttatttctcaaCCCTGATGGATTAAATTTCGATGGGGAAGTTCAGGATTTAAATACTCCAGTGAAAAATAGCGTTTTTTTCATCTTGGgcaTCAGCAACTGGTGCCCAAAGTGGAAGCCCAGACTGCAGAGAGGTGCCGTGATGCTGCGGCGGATGCTATTCGGGTTATTGATCCATATCTGCTTCTTTTGGTCCGGACAGGTTTTTCTTGGCTAGTATGGCTATTTTTTGAATGCAAACAATGCAGCTATGAGCGCAGACCTTTACACTCCTGAGTCCAATTAGAAGTTTTAATGAGACTGCATAAAGGTGGACACGTCCCAGAAGCTTTTTCATTGTTGCATGCTGCACTAGTTTTTATAGAAAATGCACGCAAAATTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650092.1 True 638 lncRNA 0.42 2 46325449 46330506

Neighbor

gene id symbol gene type direction distance location
LOC111192690 LOC108432118 coding upstream 138549 46122861 ~ 46186900 (+)
LOC103044102 LOC108432094 coding upstream 255167 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 311781 45993058 ~ 46013668 (+)
trh NA coding upstream 381991 45940868 ~ 45943458 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 711876 45607741 ~ 45613573 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 75248 46405754 ~ 46423234 (+)
LOC111192740 NA coding downstream 365973 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 497462 46827968 ~ 46851232 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 577776 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 626600 46957106 ~ 46967434 (+)
G59173 LOC108432102 non-coding upstream 28026 46285076 ~ 46297423 (+)
G59163 NA non-coding upstream 68638 46251699 ~ 46256811 (+)
LOC111192691 NA non-coding upstream 109092 46209741 ~ 46216357 (+)
G59141 NA non-coding upstream 203987 46116727 ~ 46121462 (+)
G59140 wdr46,LOC107690721 non-coding upstream 217022 46106967 ~ 46108427 (+)
G59197 NA non-coding downstream 42132 46372638 ~ 46438034 (+)
G59195 NA non-coding downstream 46277 46376783 ~ 46377313 (+)
G59203 NA non-coding downstream 105200 46435706 ~ 46437360 (+)
G59215 NA non-coding downstream 141269 46471775 ~ 46475979 (+)
G59220 fgd3,LOC106529940 non-coding downstream 152931 46483437 ~ 46485586 (+)
G58971 NA other upstream 535295 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1458611 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1724489 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1741531 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1878946 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 521858 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1293048 47623554 ~ 47661357 (+)
G59782 NA other downstream 2539661 48870167 ~ 48879623 (+)
G59806 NA other downstream 2667654 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2991772 49322278 ~ 49370251 (+)

Expression


Co-expression Network