LOC111192729


Basic Information

Item Value
gene id LOC111192729
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28533419 ~ 28535120 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650114.1
TACAGAGTTGTCCTGTTTTCCTGCAGGAGACTTGAGATCTCCATAAAACAATCCACCAGGAAGTGGAAGAGCACTGACTCCGATAAAGATACAGCACCACTGAAGAAACCTGAGACCTGTCTGAGCAAAGAATTCTTCAGTAGTGTTCCTGTAAAGAGAACAGTCTTCATTGTGTATCCCGTTGCTCCGATTGAGAGACGTGGCTGCAAGCGTCGCCGTAGGCCGAACACAAACGGCCATCCATGTCCTGCAAAACAAGCTCGACATGGACAAGCAGAGCTTCCTTCAATAAATGGAGAAGACATAAAGATTATTGATGAACTGTCCAGATGCTTTTCACTCCTGAGGGTTACTGAATAATCATTCGGGGCTGTTCCCCCCGGAtgcccaggccaggcgacgcccctgAGTGAACACATCATCACAGATCCTGCCTCTACTTCAGCATTAAATATGCTGGCTATGAATTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650114.1 True 472 lncRNA 0.47 4 28533419 28535120

Neighbor

gene id symbol gene type direction distance location
gpx8 gpx8 coding upstream 27190 28503352 ~ 28506229 (+)
anapc5 anapc5,LOC107687977,LOC107703168 coding upstream 31635 28493576 ~ 28501784 (+)
kdm2b kdm2b,kdm2ba,LOC107712479,LOC107687979 coding upstream 57758 28454932 ~ 28475661 (+)
LOC107197569 NA coding upstream 89772 28437767 ~ 28443647 (+)
gadd45g gadd45g,gadd45ga,LOC108412735,LOC107724875,LOC107686412 coding upstream 211174 28319868 ~ 28322245 (+)
LOC103031919 ggt1,LOC105891568,LOC107753164,LOC107550935,LOC107554426,LOC107712477,LOC107703144 coding downstream 66950 28602070 ~ 28616445 (+)
cabp1 cabp1,cabp1a,LOC108415942,LOC107712460,LOC107550936,LOC107687995 coding downstream 135570 28670690 ~ 28696975 (+)
mlec mlec,LOC107687973,LOC107554429,LOC107703166 coding downstream 168225 28703345 ~ 28713991 (+)
unc119b unc119b,unc119.1,LOC107753165,LOC107712459,LOC107550938,LOC107687994 coding downstream 181855 28716975 ~ 28728007 (+)
c6h12orf43 NA coding downstream 194294 28729414 ~ 28733421 (+)
G55112 NA non-coding upstream 7571 28524391 ~ 28525848 (+)
G55133 NA non-coding upstream 11062 28521676 ~ 28522357 (+)
G55132 NA non-coding upstream 11904 28521255 ~ 28521515 (+)
G55124 NA non-coding upstream 48415 28484053 ~ 28485004 (+)
G55115 NA non-coding upstream 51242 28470996 ~ 28482177 (+)
G55151 NA non-coding downstream 82746 28617866 ~ 28618376 (+)
G55205 NA non-coding downstream 180119 28715239 ~ 28715960 (+)
G55211 LOC108412053 non-coding downstream 197194 28732314 ~ 28770098 (+)
G55214 LOC108412048 non-coding downstream 202477 28737597 ~ 28746491 (+)
G55229 prkab1,prkab1b,LOC108412051,LOC107554438,LOC107753114,LOC107687987,LOC107703154 non-coding downstream 259733 28794853 ~ 28804271 (+)
ipo11 ipo11 other upstream 595030 27814215 ~ 27938389 (+)
G54841 NA other upstream 820841 27703772 ~ 27712578 (+)
LOC107197454 NA other upstream 864757 27663782 ~ 27668662 (+)
LOC103030972 LOC108430356 other upstream 1310552 27211302 ~ 27222867 (+)
G54690 tmem127,LOC107552193,LOC106579884 other upstream 1498481 27032835 ~ 27034938 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other downstream 110944 28646064 ~ 28656818 (+)
G55218 NA other downstream 218910 28754030 ~ 28754817 (+)
G55502 NA other downstream 1811896 30347016 ~ 30625046 (+)
G55532 cgnl1 other downstream 1993742 30528862 ~ 30550061 (+)
G55831 LOC107691557,LOC108411168 other downstream 3385700 31920820 ~ 31924095 (+)

Expression


Co-expression Network