LOC111192732


Basic Information

Item Value
gene id LOC111192732
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35217891 ~ 35218782 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650116.1
GATTGGGTAGTGTGTCCGAATGCGCAGTAGGCGAGTTTGAGTACGCGAAAAGTTCCCGGATGACGTACTGCACCGGgagacatttttaagtatacaaGCCCAGCACACTTCACCCGCTAatatttcccacaatccaccGGGAGCCGCGCTGAGCTGAGTGACCCGTCAGTGAGCGGCGGAGCGGCGGaggagaggagtggagagagagagaagtttatGAGattcaaCTATCCTTCCTACTCgagaggatgaagatgaagagagggagaaaaatgaacaacgaataaaaaaaataaataaagctactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650116.1 True 308 lncRNA 0.49 2 35217891 35218782

Neighbor

gene id symbol gene type direction distance location
LOC103034472 NA coding upstream 22226 35191804 ~ 35195665 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 128706 35083719 ~ 35089185 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding upstream 134599 35039169 ~ 35083292 (+)
LOC103047196 NA coding upstream 199166 35015117 ~ 35018725 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding upstream 212171 34990826 ~ 35005720 (+)
enkd1 enkd1,LOC107670972 coding downstream 41138 35259920 ~ 35265350 (+)
polb polb coding downstream 47186 35265968 ~ 35274621 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding downstream 75141 35293923 ~ 35296002 (+)
gle1 gle1,LOC102792584 coding downstream 81012 35299794 ~ 35308446 (+)
LOC103031612 NA coding downstream 89843 35308625 ~ 35311487 (+)
G56465 NA non-coding upstream 18623 35197445 ~ 35199268 (+)
G56459 NA non-coding upstream 40912 35171898 ~ 35176979 (+)
G56444 NA non-coding upstream 49870 35111041 ~ 35168021 (+)
G56448 NA non-coding upstream 81843 35133583 ~ 35136048 (+)
G56445 NA non-coding upstream 102135 35114985 ~ 35115756 (+)
G56479 NA non-coding downstream 34536 35253318 ~ 35254002 (+)
G56482 NA non-coding downstream 66669 35285451 ~ 35287472 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding downstream 93333 35312115 ~ 35315555 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding downstream 101097 35319879 ~ 35320773 (+)
G56499 NA non-coding downstream 173520 35392302 ~ 35468036 (+)
LOC103047498 NA other upstream 228606 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 466328 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 706207 34503114 ~ 34511684 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 1577814 33635152 ~ 33640077 (+)
izumo1 NA other upstream 1622073 33564828 ~ 33595818 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 7703 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 57297 35276079 ~ 35284271 (+)
G56504 NA other downstream 201936 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 737322 35956104 ~ 35964510 (+)
G57066 NA other downstream 1786491 37005273 ~ 37005798 (+)

Expression


Co-expression Network