LOC111192739


Basic Information

Item Value
gene id LOC111192739
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46690257 ~ 46690960 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650119.1
tgttgtaattattttttatatagttttaccCTTGGTTATTTCTTATGTCGATGTAGGCTGTAGGGCATAATCCCAGTGCAGACGAAGGGGATTAGAACCCAGTAGGTGGCGCCAGCGCAGAGTAATAAACCAACGCGAATATATTGAGCTCCCTCGAGACCCGTAGTGTGCCGGCATTTTTGAGAAGCGTGCTCAGGACGCCAAGTTAGTCTGGAGCTGCTGAGCTGGATGCAGTGCTGGGAGTTTGTTCTGCTTATACTGCCAGTAATATTGGAGAGAGGAGTGGAGTTACAGTTATTTAAGGAGACTGAGGCCAGTGGAAGAGCGTGTAGAGGCATTTGCAGACATAATTACTGAGCAAACTACAAGGAGGCA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650119.1 True 375 lncRNA 0.46 3 46690257 46690960

Neighbor

gene id symbol gene type direction distance location
LOC111192738 ninj1,LOC100690894,LOC106565158 coding upstream 267023 46405754 ~ 46423234 (+)
LOC111192690 LOC108432118 coding upstream 503357 46122861 ~ 46186900 (+)
LOC103044102 LOC108432094 coding upstream 619975 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 676589 45993058 ~ 46013668 (+)
trh NA coding upstream 746799 45940868 ~ 45943458 (+)
LOC111192740 NA coding downstream 5519 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 137008 46827968 ~ 46851232 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 217322 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 266146 46957106 ~ 46967434 (+)
LOC103046011 LOC108412059 coding downstream 298016 46988976 ~ 47024024 (+)
G59243 NA non-coding upstream 2230 46687261 ~ 46688027 (+)
G59241 NA non-coding upstream 5219 46684649 ~ 46685038 (+)
G59232 LOC103023429,LOC108442352,LOC108265644,LOC107549568,LOC107594970,LOC107739657,LOC107669024 non-coding upstream 82885 46600448 ~ 46607372 (+)
G59220 fgd3,LOC106529940 non-coding upstream 204671 46483437 ~ 46485586 (+)
G59215 NA non-coding upstream 214278 46471775 ~ 46475979 (+)
G59259 ubiad1,LOC107718257,LOC107572294,LOC107575167 non-coding downstream 128206 46819166 ~ 46824686 (+)
G59276 LOC108265386,LOC108442346 non-coding downstream 192390 46883350 ~ 46887023 (+)
G59285 NA non-coding downstream 235719 46926679 ~ 46931683 (+)
G59465 NA non-coding downstream 305565 46996525 ~ 46998150 (+)
G59525 LOC103145049,LOC108412246 non-coding downstream 518641 47209601 ~ 47213248 (+)
G58971 NA other upstream 900103 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1823419 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2089297 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2106339 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 2243754 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 161404 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 932594 47623554 ~ 47661357 (+)
G59782 NA other downstream 2179207 48870167 ~ 48879623 (+)
G59806 NA other downstream 2307200 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2631318 49322278 ~ 49370251 (+)

Expression


Co-expression Network