LOC111192750


Basic Information

Item Value
gene id LOC111192750
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 4330195 ~ 4365579 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650133.1
cacacagcgctgctGTGGAGGACAGTGGAGTGGAGAGCACAGTCTCTGCAGTGAGGGGAACCCGGCTGATGTAGGACAGTTCTCCAGTACACTTCAGTAActgattggtttgattaatATTGATGCTGGAAGTGAAGCTGAGGACCTGCAGATCTACAGAGCTCACCTGGATTCAGCAGCATCCTGAATCCTGCAgatcagcactgctgagGCTGATTGAGGACAGTGCAGTGGTGGATccagcatgaaacatctggccatCTCCAAATGGCTGAACCAGCTGGGTCTGCAGCAGTACTGTACACTGTTTGACGAGGAGTATGATGGAGTGGAGgatCTGCTGCACCTGACGGAGATAGACCTGCTGGGTTTAGGAGTTCACAGTCGACTCCATCGAATCCACATCCTCTCCAGCATCCAGGTCCTGCGGGAGAGGCAGACCAAGAGAGGTCagtgtctcctctctctccatctattTTTCATCGTG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650133.1 True 487 lncRNA 0.52 3 4330195 4365579

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4,LOC107603279 coding upstream 135481 3519608 ~ 4194714 (+)
bend5 bend5,LOC106584333,LOC107707580 coding upstream 288493 4020453 ~ 4041702 (+)
dmrta2 dmrta2,LOC107578325 coding upstream 1154436 3172009 ~ 3175759 (+)
rnf11 rnf11,rnf11b coding upstream 1412764 2881685 ~ 2917431 (+)
ttc39a ttc39a,LOC107743871,LOC107599797,LOC107657886,LOC107752432 coding upstream 1453767 2828935 ~ 2876428 (+)
bcar3 bcar3 coding downstream 28122 4393701 ~ 4519665 (+)
pdpn NA coding downstream 524129 4889708 ~ 4909202 (+)
LOC103034196 NA coding downstream 564965 4930544 ~ 4943083 (+)
LOC103035057 rimkla,LOC107556480,LOC107717536,LOC107669631,LOC107711947,LOC107591767 coding downstream 588698 4954277 ~ 4993901 (+)
nfya nfya,nfyal,LOC108265435,LOC107731273,LOC107668092 coding downstream 835451 5201030 ~ 5210826 (+)
G49571 mrpl55 non-coding upstream 32628 4294830 ~ 4297567 (+)
G49460 NA non-coding upstream 111861 4113712 ~ 4218334 (+)
G49399 NA non-coding upstream 274434 4042778 ~ 4055761 (+)
G49397 NA non-coding upstream 277320 3966593 ~ 4052875 (+)
G49406 NA non-coding upstream 696018 3596502 ~ 3634177 (+)
G49586 NA non-coding downstream 38450 4404029 ~ 4453720 (+)
G49589 NA non-coding downstream 105940 4471519 ~ 4525653 (+)
G49587 fnbp1l,LOC107757999,LOC107599010 non-coding downstream 160579 4526158 ~ 4632053 (+)
G49606 NA non-coding downstream 272958 4638537 ~ 4641062 (+)
G49615 abl2 non-coding downstream 289175 4654754 ~ 4658061 (+)
G49475 NA other upstream 83968 4244528 ~ 4246227 (+)
spata6 dnttip2,LOC107700367,LOC107603264,LOC107757995,LOC102796155 other upstream 90322 4199939 ~ 4239873 (+)
faf1 faf1,LOC107743872 other upstream 1178145 2982846 ~ 3152050 (+)
G48714 NA other upstream 3518930 808155 ~ 811265 (+)
prok1 prok1,LOC107680267,LOC107711938,LOC107731240 other downstream 1253580 5619159 ~ 5627452 (+)
LOC103023397 NA other downstream 1411473 5777052 ~ 5789265 (+)
G50063 NA other downstream 2005941 6371520 ~ 6376705 (+)
LOC103039117 nol4la,LOC103039117,LOC108412512,LOC108265968,LOC107680239,LOC107550513,LOC107731219,LOC107745834,LOC107549982 other downstream 2497777 6863356 ~ 6941978 (+)
trnae-cuc NA other downstream 2618611 6984190 ~ 6984261 (+)

Expression


Co-expression Network