LOC107197475



Basic Information


Item Value
gene id LOC107197475
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 9004992 ~ 9006646 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XR_002650140.1
TGTTTGTTCATTTCGTATGTCCGCTTTGTAAATTCGGAGTCACTGACAATGAGCGAGGATTTGCTCTTTTGCAAATCCGTGCAAACAAGAGCCACGGCTGAGGAGCTTTTCAAGATTATGGACAGCTACTTCACAGAACATGAGCTGAAATGGGAAAACTGTGTGGGCTTTTGCTCTGATGGTGCACAAACTATGGCAGGGAAAAGGAAAGGACTCCAGGCATTAGTCAAAAGGGCTGCACCAGACGCGCAGTGGACGCACTGCATCATCCATAGGGAAGCGCTGGCTTCCAGGCAGCTCAGCCCCGAACTAAACGAGGTTTTGACAGCAGTTGTGGATGTGGTCAATTTCATCAAAACGCGACCTCTGAAAGCGCGACTGTTCTCCGCTCTATGTGAGGAGATGGGCGCTGATCATACAGCTGTGCTATTTCACAGCGAAGCAAGGTGGCTCTCCCGAGGAAAAGTGTTGTCGCGCGTCTTGAGCTCAGAACGGAGATTCGGGTGTTTTTGGAAGAAGAGCGCATGTATGAAGCAGCGGGCAAATTTGGTGATCAACCATTTCTAATGAAACTGGCTTATCTCAGCGATGTATTTGCAAAGCTGAATGAATTAAATCTTCAGCTTCAAGGCAGAGACAAGCACCTACCTCACCTTGCAGACAAGATAACTGCATTCATCCGAAAGCTCGAAGTGTGGGGCAGGGCCTCGACCAAGGAAATACTGATGTCTTTGAGAATCTGACTGAAGTTGCTGAAACCGTTGATTCTGGAGCCACCACAGTGATTCCATGCATACAACAGCACATCAGTGCATTGAGAGGATTGTTTCAAAAATACTTTCCAAATAGTGCTGCTCAGTATGACTGGATTGTGGACCCGTTTAATGCAGCAGCACCAGCTGAGTTTAGCTCTGCCACAGAGGAACAACTGATTGAGCTGACCTCTGACTCCACCCTGAGACTAAGATTTACATCTGAGCCTCTCAGTCACTTCTGGCTTGAAGTGGAAAGGGAGTATCCACTCGTTGGGCAGAGAGCTGTGGACATTCTTCTTCCCTTTGCCACATCCTATCTCTGTGAGATTGGCTTTTCAGCTGTTACTTCACTGAAAACAAAGTACAGGTCTCAGCTTAATGTTGCACATGACTTGAGAGTGGCAGTATCAAGCATGCAACCCCGTTTTGAAAAAGATGTGTAGTGCAAAACAGGCTCACTGCAGTCACTGATGCTGTGATAAGGCATAGTCATTCGTCATTTTTTGTCACTTTGTTCTGCCTTTGCTCTTTTTTTGCACAGATTGAAAATGAAGAAACTAAACCATAATTTAGTCATTGGTCATattcatttgttgttttttgtcattttgttctGCCTTTGCTCTGCACATATTGAAATTGGATAAATTAACCAAAACTTAGTAGGccaattttctgtatttttttttttattttgcacattGATGTTAATATTTTAGAGTGTTATAATGTTAACCTTCTGCTTAAGAGACAAATTGATGttacttaataaattaattgtaaaatttaaaa

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_002650140.1 True 1547 lncRNA 0.43 2 9004992 9006646
Loading

Neighbor


gene id symbol gene type direction distance location
hsd17b4 hsd17b4 coding upstream 9240 8976218 ~ 8995752 (+)
LOC103034488 LOC108437599 coding upstream 735658 8264164 ~ 8269334 (+)
LOC103035131 LOC108437597,LOC108437601 coding upstream 742262 8259603 ~ 8262730 (+)
LOC103034161 LOC108437597,LOC108437601,LOC108265423 coding upstream 747040 8254568 ~ 8257952 (+)
LOC103033636 NA coding upstream 760268 8243882 ~ 8244724 (+)
sema6a sema6a,LOC106585847,LOC106580184 coding downstream 78392 9085038 ~ 9203129 (+)
cdo1 cdo1,LOC102791980 coding downstream 320054 9326700 ~ 9335342 (+)
tmed7 tmed7,LOC103042236,LOC102200599,LOC101168626,LOC100701005 coding downstream 338992 9345638 ~ 9351678 (+)
catsper3 NA coding downstream 346427 9353073 ~ 9354864 (+)
fem1c fem1c,LOC106580179,LOC107728259 coding downstream 351121 9357767 ~ 9364491 (+)
G50770 NA non-coding upstream 58620 8945273 ~ 8946372 (+)
G50656 NA non-coding upstream 248983 8755645 ~ 8756009 (+)
G50580 NA non-coding upstream 702082 8302516 ~ 8302910 (+)
G50565 NA non-coding upstream 801573 8202437 ~ 8203419 (+)
G50550 NA non-coding upstream 902705 8102075 ~ 8102287 (+)
G50818 NA non-coding downstream 197370 9204016 ~ 9204217 (+)
G50822 NA non-coding downstream 246527 9253173 ~ 9254126 (+)
G50841 ap3s1 non-coding downstream 302614 9309260 ~ 9324163 (+)
G50886 NA non-coding downstream 607882 9614528 ~ 9622057 (+)
G50887 NA non-coding downstream 607957 9614603 ~ 9617381 (+)
G50583 LOC108437602,LOC103398889 other upstream 660478 8342940 ~ 8344514 (+)
G50563 smarcad1,smarcad1a,LOC108437598,LOC107568413,LOC107751429 other upstream 726236 8270248 ~ 8278756 (+)
G50568 NA other upstream 783830 8207342 ~ 8221162 (+)
c6h9orf3 NA other upstream 1120934 7730684 ~ 7884058 (+)
trnae-cuc NA other upstream 2020731 6984190 ~ 6984261 (+)
G50889 grid2,LOC107556295 other downstream 636728 9643374 ~ 9782721 (+)
nfu1 nfu1,LOC108265347,LOC107553147,LOC105890045 other downstream 1117074 10123720 ~ 10130801 (+)
LOC103038184 acsl2,LOC107553163,LOC107710839,LOC107665192,LOC107716609,LOC108426687,LOC107678403 other downstream 1681239 10687885 ~ 10757255 (+)
G51423 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167,LOC107548740 other downstream 2826035 11832681 ~ 11882021 (+)
LOC103022344 foxd1,LOC103022344,LOC108265081,LOC106569011 other downstream 3077434 12084080 ~ 12129300 (+)

Expression


LOC107197475 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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LOC107197475 Expression in each Bioproject

Bar chart with 7 bars.
LOC107197475 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
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Co-expression Network